Factsheet for Solyc01g008820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 6
plasma membrane 8
endoplasmic reticulum 6
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03120.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT2G03120.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT2G03120.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058489	Potato	plasma membrane	97.63	97.63
Solyc11g064790.1.1	Tomato	plasma membrane	88.46	88.2
VIT_06s0009g03520.t01	Wine grape	plasma membrane	84.91	84.16
KRH62014	Soybean	endoplasmic reticulum	84.02	83.28
KRH52673	Soybean	plasma membrane	83.43	82.7
KRH16232	Soybean	plasma membrane	82.54	81.82
CDX88296	Canola	plasma membrane	70.41	80.41
Bra024788.1-P	Field mustard	plasma membrane	79.59	80.3
CDY03017	Canola	plasma membrane	79.59	80.3
CDY45179	Canola	plasma membrane	79.59	80.3
AT2G03120.1	Thale cress	plasma membrane	81.66	80.23
CDY60831	Canola	plasma membrane	79.29	79.76
CDY17419	Canola	plasma membrane	78.99	79.46
EES04366	Sorghum	golgi, plasma membrane	80.18	78.78
TraesCS6B01G064500.2	Wheat	plasma membrane	78.99	78.3
CDY64408	Canola	plasma membrane	79.29	78.13
Bra026567.1-P	Field mustard	plasma membrane	79.29	78.13
CDY09342	Canola	plasma membrane	78.99	77.84
Zm00001d015006_P004	Maize	plasma membrane	79.88	77.81
TraesCSU01G107100.2	Wheat	plasma membrane	78.7	77.78
Os02t0117400-01	Rice	plasma membrane	78.7	77.55
TraesCS6B01G064600.2	Wheat	plasma membrane	78.11	77.42
HORVU6Hr1G009670.1	Barley	plasma membrane	78.11	77.19
Os05t0436400-03	Rice	plasma membrane	65.09	76.92
TraesCS6A01G048100.2	Wheat	plasma membrane	77.81	76.9
TraesCS3D01G492200.1	Wheat	plasma membrane	78.11	76.74
TraesCS3B01G545500.1	Wheat	plasma membrane	77.81	76.45
KXG37644	Sorghum	plasma membrane	78.99	75.64
HORVU3Hr1G108010.6	Barley	plasma membrane	76.63	74.86
CDY03016	Canola	extracellular, golgi, plasma membrane	27.22	70.23
GSMUA_Achr4P16430_001	Banana	extracellular, plasma membrane, vacuole	26.33	63.57
Zm00001d015005_P002	Maize	plasma membrane	39.35	55.88
Zm00001d054017_P003	Maize	plasma membrane	81.36	50.64
OQU87114	Sorghum	plasma membrane	37.57	35.28
Solyc03g025550.2.1	Tomato	plasma membrane	29.29	26.26
Solyc09g098200.2.1	Tomato	plasma membrane	20.12	25.66
Solyc08g081180.2.1	Tomato	plasma membrane	26.33	16.36
Solyc01g094680.2.1	Tomato	plasma membrane	24.85	15.58
Solyc10g012430.2.1	Tomato	plasma membrane	23.96	14.94
Solyc12g098670.1.1	Tomato	plasma membrane	23.08	14.66

Protein Annotations

MapMan:18.10.1.4	MEROPS:A22.A15	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764	GO:GO:0005765	GO:GO:0005773
GO:GO:0005783	GO:GO:0005794	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	GO:GO:0030660	GO:GO:0071458	GO:GO:0071556
UniProt:K4AT78	PFAM:PF04258	PANTHER:PTHR12174	PANTHER:PTHR12174:SF23	InterPro:Peptidase_A22B_SPP	InterPro:Preselin/SPP
SMART:SM00730	EnsemblPlantsGene:Solyc01g008820.2	EnsemblPlants:Solyc01g008820.2.1	TMHMM:TMhelix	UniParc:UPI000276331C	SEG:seg

Description

No Description!

Coordinates

chr1:+:2843927..2849931

Molecular Weight (calculated)

37409.3 Da

IEP (calculated)

7.868

GRAVY (calculated)

0.640

Length

338 amino acids

Sequence
(BLAST)

001: MNSERLANVA LAGLSLAPLV VNVDPNLNVV LTACLTVFVG CYRSVKPTPP TETMSKEHAM RFPLVGSAML LSLFLLFKFL SKDLVNAVLT CYFFVLGIAA
101: FAATLLPAIK RFLPEKWNED LVIWHFPYFR SLEFEFTRSQ IVAAIPGTMF CVWYAKQKHW LANNVLGLAF SIQGIEMLSL GSFKTGAILL AGLFVYDIFW
201: VFFTPVMVSV AKSFDAPIKL LFPTADLKRP FSMLGLGDIV IPGIFVALAL RFDVSRGKGP QYFISAFSGY AVGVISTIIV MNWFQAAQPA LLYIVPAVIG
301: FVAVHCIWNG DMKPLLEFDE SKTQSTEEVA AEESKKVE

Best Arabidopsis Sequence Match ( AT2G03120.1 )
(BLAST)

001: MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE

Arabidopsis Description

SPPSignal peptide peptidase [Source:UniProtKB/Swiss-Prot;Acc:O81062]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.