Factsheet for GSMUA_Achr4P16430_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P10230_001
GSMUA_Achr4P15460_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P14800_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03120.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT2G03120.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT2G03120.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT2G03120.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G03120.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G03120.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT2G03120.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT2G03120.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT2G03120.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88296	Canola	plasma membrane	64.29	30.41
GSMUA_Achr5P08750_001	Banana	plasma membrane	67.86	27.54
PGSC0003DMT400024446	Potato	plasma membrane	65.0	27.08
Bra024788.1-P	Field mustard	plasma membrane	64.29	26.87
CDY45179	Canola	plasma membrane	64.29	26.87
CDY03017	Canola	plasma membrane	64.29	26.87
CDY60831	Canola	plasma membrane	64.29	26.79
CDY17419	Canola	plasma membrane	64.29	26.79
KRH52673	Soybean	plasma membrane	65.0	26.69
Solyc11g064790.1.1	Tomato	plasma membrane	64.29	26.55
VIT_06s0009g03520.t01	Wine grape	plasma membrane	64.29	26.39
Solyc01g008820.2.1	Tomato	plasma membrane	63.57	26.33
CDY09342	Canola	plasma membrane	64.29	26.24
CDY64408	Canola	plasma membrane	64.29	26.24
Bra026567.1-P	Field mustard	plasma membrane	64.29	26.24
KRH62014	Soybean	endoplasmic reticulum	63.57	26.1
PGSC0003DMT400058489	Potato	plasma membrane	62.86	26.04
AT2G03120.1	Thale cress	plasma membrane	62.86	25.58
KRH16232	Soybean	plasma membrane	60.71	24.93
GSMUA_Achr1P24450_001	Banana	plasma membrane	40.0	18.42
Bra017402.1-P	Field mustard	golgi, plasma membrane	19.29	17.2
GSMUA_Achr3P14450_001	Banana	endoplasmic reticulum, plasma membrane	18.57	6.99
GSMUA_Achr8P16510_001	Banana	plasma membrane	15.71	5.58
CDY03016	Canola	extracellular, golgi, plasma membrane	5.0	5.34
GSMUA_Achr11P...	Banana	plasma membrane	15.0	5.1
GSMUA_AchrUn_...	Banana	plasma membrane	12.14	4.08
GSMUA_Achr4P12000_001	Banana	plasma membrane	14.29	3.77
GSMUA_Achr10P...	Banana	plasma membrane	14.29	3.76
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	1.43	2.2
GSMUA_Achr9P20490_001	Banana	cytosol, extracellular, golgi, mitochondrion	1.43	1.98
GSMUA_Achr8P16520_001	Banana	endoplasmic reticulum, extracellular	1.43	1.17
GSMUA_Achr1P17420_001	Banana	cytosol, plasma membrane, plastid	1.43	1.17
GSMUA_Achr11P...	Banana	extracellular	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006508
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009555	GO:GO:0009846	GO:GO:0009856
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G16430_001	EnsemblPlants:GSMUA_Achr4P16430_001
EnsemblPlants:GSMUA_Achr4T16430_001	UniProt:M0SPF7	PFAM:PF04258	PANTHER:PTHR12174	PANTHER:PTHR12174:SF23	InterPro:Peptidase_A22B_SPP
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002967D9A	SEG:seg	:	:

Description

signal peptide peptidase domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G16430_001]

Coordinates

chr4:-:14871346..14871976

Molecular Weight (calculated)

16030.4 Da

IEP (calculated)

8.723

GRAVY (calculated)

1.037

Length

140 amino acids

Sequence
(BLAST)

001: MVSFIFMLGL TLAPLVVKVN PNINVVLTAC LTLPLVIHPE IMKYVQETMS NEHAMRFLLA GSAMLLAQFL LFKFLAKDLV SAVLTCYFFV LGIVAFSVTL
101: LPAINRFLPK HWNDDLIVWH VPYFRGMLYF ISFLFLNSWI

Best Arabidopsis Sequence Match ( AT2G03120.1 )
(BLAST)

001: MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE

Arabidopsis Description

SPPSignal peptide peptidase [Source:UniProtKB/Swiss-Prot;Acc:O81062]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.