Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 8
- golgi 6
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400006495 | |
PGSC0003DMT400071510 | |
PGSC0003DMT400073246 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G03120.1 | PGSC0003DMT400006495 | AT3G16310.1 | 21798944 |
AT2G03120.1 | PGSC0003DMT400071510 | AT4G19030.1 | 21798944 |
AT2G03120.1 | PGSC0003DMT400073246 | AT4G19030.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g008820.2.1 | Tomato | plasma membrane | 97.63 | 97.63 |
PGSC0003DMT400024446 | Potato | plasma membrane | 89.64 | 90.18 |
VIT_06s0009g03520.t01 | Wine grape | plasma membrane | 85.5 | 84.75 |
KRH62014 | Soybean | endoplasmic reticulum | 84.62 | 83.87 |
KRH52673 | Soybean | plasma membrane | 84.02 | 83.28 |
KRH16232 | Soybean | plasma membrane | 83.43 | 82.7 |
Bra024788.1-P | Field mustard | plasma membrane | 79.59 | 80.3 |
CDY45179 | Canola | plasma membrane | 79.59 | 80.3 |
CDY03017 | Canola | plasma membrane | 79.59 | 80.3 |
AT2G03120.1 | Thale cress | plasma membrane | 81.66 | 80.23 |
CDX88296 | Canola | plasma membrane | 70.12 | 80.07 |
CDY60831 | Canola | plasma membrane | 79.29 | 79.76 |
CDY17419 | Canola | plasma membrane | 78.99 | 79.46 |
EES04366 | Sorghum | golgi, plasma membrane | 80.77 | 79.36 |
TraesCS6B01G064500.2 | Wheat | plasma membrane | 79.29 | 78.59 |
Zm00001d015006_P004 | Maize | plasma membrane | 80.47 | 78.39 |
Os02t0117400-01 | Rice | plasma membrane | 79.29 | 78.13 |
Bra026567.1-P | Field mustard | plasma membrane | 79.29 | 78.13 |
CDY64408 | Canola | plasma membrane | 79.29 | 78.13 |
TraesCSU01G107100.2 | Wheat | plasma membrane | 78.99 | 78.07 |
TraesCS6B01G064600.2 | Wheat | plasma membrane | 78.7 | 78.01 |
CDY09342 | Canola | plasma membrane | 78.99 | 77.84 |
HORVU6Hr1G009670.1 | Barley | plasma membrane | 78.4 | 77.49 |
Os05t0436400-03 | Rice | plasma membrane | 65.38 | 77.27 |
TraesCS6A01G048100.2 | Wheat | plasma membrane | 78.11 | 77.19 |
TraesCS3B01G545500.1 | Wheat | plasma membrane | 77.81 | 76.45 |
TraesCS3D01G492200.1 | Wheat | plasma membrane | 77.81 | 76.45 |
KXG37644 | Sorghum | plasma membrane | 79.59 | 76.2 |
HORVU3Hr1G108010.6 | Barley | plasma membrane | 76.33 | 74.57 |
CDY03016 | Canola | extracellular, golgi, plasma membrane | 27.81 | 71.76 |
GSMUA_Achr4P16430_001 | Banana | extracellular, plasma membrane, vacuole | 26.04 | 62.86 |
Zm00001d015005_P002 | Maize | plasma membrane | 39.65 | 56.3 |
Zm00001d054017_P003 | Maize | plasma membrane | 81.95 | 51.01 |
OQU87114 | Sorghum | plasma membrane | 37.87 | 35.56 |
PGSC0003DMT400040816 | Potato | plasma membrane | 26.92 | 25.56 |
PGSC0003DMT400031075 | Potato | cytosol, peroxisome, plasma membrane | 21.89 | 24.58 |
PGSC0003DMT400032136 | Potato | plasma membrane | 26.04 | 16.18 |
PGSC0003DMT400011660 | Potato | plasma membrane | 23.67 | 15.04 |
Protein Annotations
MapMan:18.10.1.4 | MEROPS:A22.A15 | EMBL:AM231414 | ProteinID:CAJ77509 | ProteinID:CAJ77509.1 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004190 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | UniProt:M1C2R5 |
PFAM:PF04258 | EnsemblPlantsGene:PGSC0003DMG400022714 | PGSC:PGSC0003DMG400022714 | EnsemblPlants:PGSC0003DMT400058489 | PANTHER:PTHR12174 | PANTHER:PTHR12174:SF23 |
InterPro:Peptidase_A22B_SPP | InterPro:Preselin/SPP | SMART:SM00730 | TMHMM:TMhelix | UniParc:UPI000295AF07 | SEG:seg |
Description
Minor histocompatibility antigen H13 [Source:PGSC_GENE;Acc:PGSC0003DMG400022714]
Coordinates
chr1:+:5120127..5126327
Molecular Weight (calculated)
37454.3 Da
IEP (calculated)
8.195
GRAVY (calculated)
0.598
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSERLANIA LAGLSLAPLV VNVDPNLNVV LTACLTVFVG CYRSVKPTPP SETMSKEHAM RFPLVGSAML LSLFLLFKFL SKDLVNAVLT CYFFVLGIAA
101: FSATLLPSIK RFLPEKWNED LVIWHFPYFR SLEFEFTRSQ IVAAIPGTMF CVWYAKQKHW LANNVLGLAF SIQGIEMLSL GSFKTGAILL AGLFVYDIFW
201: VFFTPVMVSV AKSFDAPIKL LFPTSDLKRP FSMLGLGDIV IPGIFVALAL RFDVSRGKGP QYFKSAFSGY AVGVISTIIV MNWFQAAQPA LLYIVPAVIG
301: FLAVHCIWNG DVKPLLEFDE SKTQSTEEVA AEESKKVE
101: FSATLLPSIK RFLPEKWNED LVIWHFPYFR SLEFEFTRSQ IVAAIPGTMF CVWYAKQKHW LANNVLGLAF SIQGIEMLSL GSFKTGAILL AGLFVYDIFW
201: VFFTPVMVSV AKSFDAPIKL LFPTSDLKRP FSMLGLGDIV IPGIFVALAL RFDVSRGKGP QYFKSAFSGY AVGVISTIIV MNWFQAAQPA LLYIVPAVIG
301: FLAVHCIWNG DVKPLLEFDE SKTQSTEEVA AEESKKVE
001: MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE
Arabidopsis Description
SPPSignal peptide peptidase [Source:UniProtKB/Swiss-Prot;Acc:O81062]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.