Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- golgi 4
- extracellular 3
- plasma membrane 5
- endoplasmic reticulum 3
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G03120.1 | EES02290 | AT3G16310.1 | 21798944 |
| AT2G03120.1 | EES19830 | AT3G16310.1 | 21798944 |
| AT2G03120.1 | EES12559 | AT3G60600.1 | 21798944 |
| AT2G03120.1 | EES14570 | AT3G60600.1 | 21798944 |
| AT2G03120.1 | KXG31128 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0436400-03 | Rice | plasma membrane | 41.94 | 52.8 |
| Os02t0117400-01 | Rice | plasma membrane | 43.06 | 45.19 |
| EES04366 | Sorghum | golgi, plasma membrane | 42.78 | 44.77 |
| KXG37644 | Sorghum | plasma membrane | 43.33 | 44.19 |
| GSMUA_Achr1P24450_001 | Banana | plasma membrane | 37.22 | 44.08 |
| CDY03016 | Canola | extracellular, golgi, plasma membrane | 15.56 | 42.75 |
| TraesCS3D01G492200.1 | Wheat | plasma membrane | 40.83 | 42.73 |
| TraesCSU01G107100.2 | Wheat | plasma membrane | 40.56 | 42.69 |
| TraesCS6B01G064600.2 | Wheat | plasma membrane | 40.28 | 42.52 |
| TraesCS6B01G064500.2 | Wheat | plasma membrane | 40.28 | 42.52 |
| TraesCS3B01G545500.1 | Wheat | plasma membrane | 40.56 | 42.44 |
| HORVU6Hr1G009670.1 | Barley | plasma membrane | 40.28 | 42.4 |
| TraesCS6A01G048100.2 | Wheat | plasma membrane | 39.72 | 41.81 |
| HORVU3Hr1G108010.6 | Barley | plasma membrane | 39.17 | 40.75 |
| GSMUA_Achr5P08750_001 | Banana | plasma membrane | 38.61 | 40.29 |
| KRH16232 | Soybean | plasma membrane | 37.5 | 39.59 |
| CDY60831 | Canola | plasma membrane | 36.94 | 39.58 |
| CDY17419 | Canola | plasma membrane | 36.94 | 39.58 |
| KRH52673 | Soybean | plasma membrane | 37.22 | 39.3 |
| KRH62014 | Soybean | endoplasmic reticulum | 37.22 | 39.3 |
| CDX88296 | Canola | plasma membrane | 32.22 | 39.19 |
| CDY03017 | Canola | plasma membrane | 36.39 | 39.1 |
| CDY45179 | Canola | plasma membrane | 36.11 | 38.81 |
| Bra024788.1-P | Field mustard | plasma membrane | 36.11 | 38.81 |
| VIT_06s0009g03520.t01 | Wine grape | plasma membrane | 36.67 | 38.71 |
| PGSC0003DMT400024446 | Potato | plasma membrane | 36.11 | 38.69 |
| CDY64408 | Canola | plasma membrane | 36.39 | 38.19 |
| CDY09342 | Canola | plasma membrane | 36.39 | 38.19 |
| Bra026567.1-P | Field mustard | plasma membrane | 36.39 | 38.19 |
| Solyc11g064790.1.1 | Tomato | plasma membrane | 35.83 | 38.05 |
| PGSC0003DMT400058489 | Potato | plasma membrane | 35.56 | 37.87 |
| AT2G03120.1 | Thale cress | plasma membrane | 36.11 | 37.79 |
| Solyc01g008820.2.1 | Tomato | plasma membrane | 35.28 | 37.57 |
| Bra017402.1-P | Field mustard | golgi, plasma membrane | 10.28 | 23.57 |
| KXG25380 | Sorghum | plasma membrane | 18.06 | 17.52 |
| OQU81829 | Sorghum | plasma membrane | 12.78 | 8.61 |
| OQU88099 | Sorghum | plasma membrane | 12.22 | 8.49 |
| EES06047 | Sorghum | plasma membrane | 12.5 | 8.23 |
| EER90450 | Sorghum | plasma membrane | 11.67 | 7.84 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A1W0VYD0 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004190 | GO:GO:0005575 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | EnsemblPlants:OQU87114 | ProteinID:OQU87114 | ProteinID:OQU87114.1 | ProteinID:OQU87115.1 | PFAM:PF04258 |
| PANTHER:PTHR12174 | PANTHER:PTHR12174:SF23 | InterPro:Peptidase_A22B_SPP | InterPro:Preselin/SPP | SMART:SM00730 | EnsemblPlantsGene:SORBI_3003G207500 |
| TMHMM:TMhelix | UniParc:UPI0009DC8BE6 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:53801225..53807596
Molecular Weight (calculated)
39591.5 Da
IEP (calculated)
5.344
GRAVY (calculated)
0.149
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDTTSKEHA MLLSVFLPFK FLSKDLIIVA ITAYFIRGIV ALSATVLPSI KRFLTKQWNY KEVVRQTPLI HTVSVDFIKS WIVASIPGIF LCLWYVANKH
101: CLANNVLGIS SRIQGINMLS VGSFRAGGIL LLLFPAADAA WSSSITPTLG DTVIPGIFVA LALCIALPKC SKNRFFNCAL LRYTVGLTVA IIIMNWFQAA
201: QPALLYVVPG VIGLVVIRWL WNGEVKQDGT NQLMDKVWNW SNMYGTRLKK FDGWVLHHTT NEDSNSGEHD AVARPEDHEG GSEDAHGGEE DASAPLEDHG
301: YNGEEDAAAS LEDDDGDQDD RAAASEDSDD TLCHLAIARC RCWPFVQTSL FVLSTGTTVK
101: CLANNVLGIS SRIQGINMLS VGSFRAGGIL LLLFPAADAA WSSSITPTLG DTVIPGIFVA LALCIALPKC SKNRFFNCAL LRYTVGLTVA IIIMNWFQAA
201: QPALLYVVPG VIGLVVIRWL WNGEVKQDGT NQLMDKVWNW SNMYGTRLKK FDGWVLHHTT NEDSNSGEHD AVARPEDHEG GSEDAHGGEE DASAPLEDHG
301: YNGEEDAAAS LEDDDGDQDD RAAASEDSDD TLCHLAIARC RCWPFVQTSL FVLSTGTTVK
001: MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE
Arabidopsis Description
SPPSignal peptide peptidase [Source:UniProtKB/Swiss-Prot;Acc:O81062]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.