Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 8
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0117400-01 | Rice | plasma membrane | 82.9 | 83.38 |
| Os05t0436400-03 | Rice | plasma membrane | 68.99 | 83.22 |
| EES04366 | Sorghum | golgi, plasma membrane | 82.9 | 83.14 |
| TraesCS6B01G064500.2 | Wheat | plasma membrane | 81.45 | 82.4 |
| TraesCS6B01G064600.2 | Wheat | plasma membrane | 81.16 | 82.11 |
| HORVU6Hr1G009670.1 | Barley | plasma membrane | 80.58 | 81.29 |
| Zm00001d015006_P004 | Maize | plasma membrane | 81.74 | 81.27 |
| TraesCS3D01G492200.1 | Wheat | plasma membrane | 80.87 | 81.1 |
| TraesCS3B01G545500.1 | Wheat | plasma membrane | 80.87 | 81.1 |
| TraesCS6A01G048100.2 | Wheat | plasma membrane | 80.29 | 80.99 |
| TraesCSU01G107100.2 | Wheat | plasma membrane | 80.0 | 80.7 |
| GSMUA_Achr1P24450_001 | Banana | plasma membrane | 71.01 | 80.59 |
| KXG37644 | Sorghum | plasma membrane | 81.16 | 79.32 |
| HORVU3Hr1G108010.6 | Barley | plasma membrane | 78.84 | 78.61 |
| GSMUA_Achr4P16430_001 | Banana | extracellular, plasma membrane, vacuole | 27.54 | 67.86 |
| Zm00001d015005_P002 | Maize | plasma membrane | 41.45 | 60.08 |
| Zm00001d054017_P003 | Maize | plasma membrane | 82.61 | 52.49 |
| OQU87114 | Sorghum | plasma membrane | 40.29 | 38.61 |
| GSMUA_Achr9P20490_001 | Banana | cytosol, extracellular, golgi, mitochondrion | 8.12 | 27.72 |
| GSMUA_Achr3P14450_001 | Banana | endoplasmic reticulum, plasma membrane | 29.57 | 27.42 |
| GSMUA_Achr1P17420_001 | Banana | cytosol, plasma membrane, plastid | 13.33 | 26.9 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, plasma membrane | 6.96 | 26.37 |
| GSMUA_Achr8P16510_001 | Banana | plasma membrane | 24.06 | 21.07 |
| GSMUA_Achr11P... | Banana | extracellular | 6.38 | 17.89 |
| GSMUA_Achr11P... | Banana | plasma membrane | 21.16 | 17.72 |
| GSMUA_Achr4P12000_001 | Banana | plasma membrane | 25.22 | 16.38 |
| GSMUA_Achr10P... | Banana | plasma membrane | 23.77 | 15.41 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 13.91 | 11.51 |
| GSMUA_Achr8P16520_001 | Banana | endoplasmic reticulum, extracellular | 1.45 | 2.92 |
Protein Annotations
| MapMan:18.10.1.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004190 | GO:GO:0005575 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSMUA_Achr5G08750_001 | EnsemblPlants:GSMUA_Achr5P08750_001 | EnsemblPlants:GSMUA_Achr5T08750_001 | UniProt:M0SWV4 | PFAM:PF04258 | PFscan:PS51257 |
| PANTHER:PTHR12174 | PANTHER:PTHR12174:SF23 | InterPro:Peptidase_A22B_SPP | InterPro:Preselin/SPP | SMART:SM00730 | TMHMM:TMhelix |
| UniParc:UPI0002967EB4 | SEG:seg | : | : | : | : |
Description
Putative Minor histocompatibility antigen H13 [Source:GMGC_GENE;Acc:GSMUA_Achr5G08750_001]
Coordinates
chr5:+:6332789..6340945
Molecular Weight (calculated)
38196.1 Da
IEP (calculated)
8.757
GRAVY (calculated)
0.588
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTHERAANF ALLGLTLAPL VVNVNPNVNV VLTACLTVYV GCYRSVKPTP PSETMSNEHA MRFPLVGSAM LLSLFLLFKF FSKDLVNAVL TCYFFVLGIV
101: ALSATLLPAI KRFLPRHWND DLIVWRAPYF HSASLEFTRS QVVASVPGTF FCVWYVLKKH WLANNILGIA FCIQGIEMLS LGSFKTGAIL LVGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTSDAAR PFSMLGLGDI VIPGIFVALA LRFDVSRGKQ LRYFSSSFLG YTVGLVLTIV VMNWFQAAQP ALLYIVPGVI
301: GFVAAHCLWN GEVKPLLEYD ESKLSTEPSS SSTQDGETKA DKKVD
101: ALSATLLPAI KRFLPRHWND DLIVWRAPYF HSASLEFTRS QVVASVPGTF FCVWYVLKKH WLANNILGIA FCIQGIEMLS LGSFKTGAIL LVGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTSDAAR PFSMLGLGDI VIPGIFVALA LRFDVSRGKQ LRYFSSSFLG YTVGLVLTIV VMNWFQAAQP ALLYIVPGVI
301: GFVAAHCLWN GEVKPLLEYD ESKLSTEPSS SSTQDGETKA DKKVD
001: MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE
Arabidopsis Description
SPPSignal peptide peptidase [Source:UniProtKB/Swiss-Prot;Acc:O81062]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.