Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0436400-03 | Rice | plasma membrane | 74.67 | 79.37 |
| GSMUA_Achr5P08750_001 | Banana | plasma membrane | 80.59 | 71.01 |
| Os02t0117400-01 | Rice | plasma membrane | 74.34 | 65.89 |
| EES04366 | Sorghum | golgi, plasma membrane | 73.68 | 65.12 |
| Zm00001d015006_P004 | Maize | plasma membrane | 74.01 | 64.84 |
| TraesCS6B01G064500.2 | Wheat | plasma membrane | 71.71 | 63.93 |
| TraesCS6B01G064600.2 | Wheat | plasma membrane | 71.38 | 63.64 |
| TraesCSU01G107100.2 | Wheat | plasma membrane | 71.05 | 63.16 |
| HORVU6Hr1G009670.1 | Barley | plasma membrane | 71.05 | 63.16 |
| TraesCS3D01G492200.1 | Wheat | plasma membrane | 71.05 | 62.79 |
| TraesCS3B01G545500.1 | Wheat | plasma membrane | 71.05 | 62.79 |
| KXG37644 | Sorghum | plasma membrane | 72.37 | 62.32 |
| TraesCS6A01G048100.2 | Wheat | plasma membrane | 70.07 | 62.28 |
| HORVU3Hr1G108010.6 | Barley | plasma membrane | 69.41 | 60.98 |
| Zm00001d015005_P002 | Maize | plasma membrane | 38.16 | 48.74 |
| Zm00001d054017_P003 | Maize | plasma membrane | 73.36 | 41.07 |
| GSMUA_Achr4P16430_001 | Banana | extracellular, plasma membrane, vacuole | 18.42 | 40.0 |
| OQU87114 | Sorghum | plasma membrane | 44.08 | 37.22 |
| GSMUA_Achr1P17420_001 | Banana | cytosol, plasma membrane, plastid | 15.46 | 27.49 |
| GSMUA_Achr9P20490_001 | Banana | cytosol, extracellular, golgi, mitochondrion | 8.55 | 25.74 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, plasma membrane | 7.57 | 25.27 |
| GSMUA_Achr3P14450_001 | Banana | endoplasmic reticulum, plasma membrane | 29.61 | 24.19 |
| GSMUA_Achr8P16510_001 | Banana | plasma membrane | 25.0 | 19.29 |
| GSMUA_Achr11P... | Banana | plasma membrane | 22.04 | 16.26 |
| GSMUA_Achr11P... | Banana | extracellular | 6.58 | 16.26 |
| GSMUA_Achr4P12000_001 | Banana | plasma membrane | 24.34 | 13.94 |
| GSMUA_Achr10P... | Banana | plasma membrane | 23.03 | 13.16 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 12.83 | 9.35 |
| GSMUA_Achr8P16520_001 | Banana | endoplasmic reticulum, extracellular | 1.64 | 2.92 |
Protein Annotations
| MapMan:18.10.1.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004190 | GO:GO:0005575 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSMUA_Achr1G24450_001 | EnsemblPlants:GSMUA_Achr1P24450_001 | EnsemblPlants:GSMUA_Achr1T24450_001 | UniProt:M0S2Q2 | PFAM:PF04258 | PANTHER:PTHR12174 |
| PANTHER:PTHR12174:SF23 | InterPro:Peptidase_A22B_SPP | InterPro:Preselin/SPP | SMART:SM00730 | TMHMM:TMhelix | UniParc:UPI000295FDA6 |
| SEG:seg | : | : | : | : | : |
Description
Putative Minor histocompatibility antigen H13 [Source:GMGC_GENE;Acc:GSMUA_Achr1G24450_001]
Coordinates
chr1:+:18856678..18863930
Molecular Weight (calculated)
34066.0 Da
IEP (calculated)
8.567
GRAVY (calculated)
0.596
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFPFVGSAM LLLLFLLFKI FSKDLVNAVL TCYFFILGIV AISATLSPAI KRFLPEHWNN DLIIWRAPYF DSASVEFTRS QIVASIPGTF FCLWYALKKH
101: WLANNILGIA FCIQGIEMMS LGSFKTGAIL LVGLFFYDIF WVFFTPVMVS VAKSFDAPVK LLFPTSDAAR RFSMLGLGDI VIPGIFVALA LRFDVSRGKK
201: ICYFNSAFLG YTIGLTLTII VMNWFQAAQP ALLYIVPGVI GIVGAHCLWN GDVKMLLEYD ESKTSSELSS SSSSSPRDED AKADKKSIIV PDWFLKHRCF
301: NETQ
101: WLANNILGIA FCIQGIEMMS LGSFKTGAIL LVGLFFYDIF WVFFTPVMVS VAKSFDAPVK LLFPTSDAAR RFSMLGLGDI VIPGIFVALA LRFDVSRGKK
201: ICYFNSAFLG YTIGLTLTII VMNWFQAAQP ALLYIVPGVI GIVGAHCLWN GDVKMLLEYD ESKTSSELSS SSSSSPRDED AKADKKSIIV PDWFLKHRCF
301: NETQ
001: MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE
Arabidopsis Description
SPPSignal peptide peptidase [Source:UniProtKB/Swiss-Prot;Acc:O81062]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.