Factsheet for PGSC0003DMT400032136

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 7
plasma membrane 8
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	golgi, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081180.2.1	Tomato	plasma membrane	97.79	97.79
KRH77554	Soybean	extracellular, golgi	25.55	81.76
VIT_02s0025g03400.t01	Wine grape	plasma membrane	79.23	78.65
GSMUA_Achr4P12000_001	Banana	plasma membrane	75.92	77.78
Bra027793.1-P	Field mustard	plasma membrane	75.18	75.88
CDY45351	Canola	plasma membrane	75.18	75.88
CDY08318	Canola	plasma membrane	74.63	75.32
AT1G63690.1	Thale cress	plasma membrane	74.63	75.19
KRH27921	Soybean	plasma membrane	74.45	74.59
GSMUA_Achr10P...	Banana	plasma membrane	72.06	73.68
KRH77552	Soybean	plasma membrane	48.9	71.31
Zm00001d014901_P001	Maize	plasma membrane	70.04	71.08
EER90450	Sorghum	plasma membrane	69.67	70.71
Os02t0823000-01	Rice	plasma membrane	70.22	70.09
Os06t0730900-01	Rice	plasma membrane	68.93	69.19
EES06047	Sorghum	plasma membrane	68.57	68.19
TraesCS6A01G406000.1	Wheat	plasma membrane	68.2	67.95
TraesCS6D01G389600.1	Wheat	plasma membrane	68.01	67.77
TraesCS6B01G451100.1	Wheat	plasma membrane	68.01	67.77
TraesCS7D01G543700.1	Wheat	plasma membrane	67.28	66.67
Zm00001d051873_P002	Maize	plasma membrane	66.54	66.06
TraesCS7A01G568900.1	Wheat	plasma membrane	67.65	65.13
TraesCS7B01G489700.3	Wheat	plasma membrane, vacuole	67.46	64.16
KRH54524	Soybean	plasma membrane	29.04	62.45
HORVU7Hr1G122650.3	Barley	nucleus, plasma membrane	67.46	60.07
TraesCS4D01G010500.1	Wheat	plasma membrane	47.43	55.13
KRH66530	Soybean	golgi, plasma membrane, plastid	19.49	54.08
PGSC0003DMT400031075	Potato	cytosol, peroxisome, plasma membrane	28.31	51.16
PGSC0003DMT400011660	Potato	plasma membrane	40.99	41.92
PGSC0003DMT400024446	Potato	plasma membrane	16.36	26.49
PGSC0003DMT400058489	Potato	plasma membrane	16.18	26.04
KRH61017	Soybean	cytosol	33.46	23.36
PGSC0003DMT400040816	Potato	plasma membrane	15.07	23.03

Protein Annotations

EntrezGene:102596175	MapMan:18.10.1.4	Gene3D:3.50.30.30	MEROPS:A22.A05	GO:GO:0003674	GO:GO:0003824
GO:GO:0004190	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	UniProt:M1AWY2	InterPro:PA_domain	PFAM:PF02225
PFAM:PF04258	EnsemblPlantsGene:PGSC0003DMG401012338	PGSC:PGSC0003DMG401012338	EnsemblPlants:PGSC0003DMT400032136	PANTHER:PTHR12174	PANTHER:PTHR12174:SF47
InterPro:Peptidase_A22B_SPP	InterPro:Preselin/SPP	SMART:SM00730	SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000296A4E3	RefSeq:XP_006343972.1	SEG:seg	:	:	:

Description

Minor histocompatibility antigen H13 [Source:PGSC_GENE;Acc:PGSC0003DMG401012338]

Coordinates

chr8:+:54863291..54871368

Molecular Weight (calculated)

59939.0 Da

IEP (calculated)

6.262

GRAVY (calculated)

0.463

Length

544 amino acids

Sequence
(BLAST)

001: MDFLRITSLI FICGVLLNFP AIVTAGDIVH DDDLAPKKPG CENDFVLVKV QTWINGEEDA EFVGVGARFG TTIVSKEKNA QQTPLTLSDP RDCCKPPRKK
101: LSGEVVMVDR GHCKFTTKAN NAEAAGASAI LIVNNEKELY KMVCDPGETD LDIHIPAVML PQDAGITLNK MLLNGSSVTV QLYSPKRPVV DIAEVFLWLM
201: AVGTILCGSY WSAGSAREAA IEQDKLLKDA SEKELPNFGT GDSSTVMDIN MISAVLFVVV ASCFLIVLYK LMRFTWFFEI LVVLFCIGGV EGLQTCLVAL
301: LARWFKRTGQ LYIKVPIFGA VSYLTLAVSP FCITFAVVWA VYRNSSFGWI GQDILGIALI ITVLQIVRIP NLKVGSVLLG CAFIYDIFWV FASQSLFHES
401: VMIVVARGDK SGEDGIPMLL KIPRLFDPWG GYSIIGFGDI LLPGLLVAFS LRYDWLAKKN LRAGYFLWAM IAYGLGLLIT YVALNLMDGH GQPALLYIVP
501: FTLGTFLMLG RKRGDLKILW TKGEPERVCP HVCLISIEES NREG

Best Arabidopsis Sequence Match ( AT1G63690.1 )
(BLAST)

001: MDSLRFLRIL LLSSSILLLS LRSTVTAGDI VHQDNLAPKK PGCENDFVLV KVQTWIDGVE NEEFVGVGAR FGKRIVSKEK NANQTHLVFA NPRDSCTPLK
101: NKLSGDVVIV ERGNCRFTAK ANNAEAAGAS ALLIINNQKE LYKMVCEPDE TDLDIQIPAV MLPQDAGASL QKMLANSSKV SAQLYSPRRP AVDVAEVFLW
201: LMAIGTILCA SYWSAWSARE AAIEHDKLLK DAIDEIPNTN DGGSGVVEIN SISAIFFVVL ASGFLVILYK LMSYWFVELL VVVFCIGGVE GLQTCLVALL
301: SRWFQRAADT YVKVPFLGPI SYLTLAVSPF CIVFAVLWAV YRVHSFAWIG QDVLGIALII TVLQIVHVPN LKVGTVLLSC AFLYDIFWVF VSKKLFHESV
401: MIVVARGDKS GEDGIPMLLK IPRMFDPWGG YSIIGFGDIL LPGLLIAFAL RYDWLANKTL RTGYFIWAMV AYGLGLLITY VALNLMDGHG QPALLYIVPF
501: TLGTMLTLAR KRDDLWILWT KGEPERACPH HVRLEQCSEK

Arabidopsis Description

SPPL2Signal peptide peptidase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W469]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.