Factsheet for TraesCS6A01G406000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G451100.1	Wheat	plasma membrane	99.45	99.45
TraesCS6D01G389600.1	Wheat	plasma membrane	99.27	99.27
Os02t0823000-01	Rice	plasma membrane	85.9	86.06
EES06047	Sorghum	plasma membrane	80.95	80.8
Zm00001d051873_P002	Maize	plasma membrane	78.02	77.74
GSMUA_Achr4P12000_001	Banana	plasma membrane	73.99	76.08
GSMUA_Achr10P...	Banana	plasma membrane	72.53	74.44
KRH77554	Soybean	extracellular, golgi	22.71	72.94
TraesCS7A01G568900.1	Wheat	plasma membrane	75.27	72.74
VIT_15s0046g02460.t01	Wine grape	plasma membrane	69.23	70.79
VIT_02s0012g02640.t01	Wine grape	golgi, plasma membrane, plastid	19.41	70.67
Bra033245.1-P	Field mustard	plasma membrane	62.64	69.23
VIT_02s0025g03400.t01	Wine grape	plasma membrane	69.23	68.98
KRH00766	Soybean	plasma membrane	67.95	68.83
KRH40447	Soybean	plasma membrane	67.95	68.83
Solyc08g081180.2.1	Tomato	plasma membrane	68.13	68.38
AT1G63690.1	Thale cress	plasma membrane	67.58	68.33
KRH48125	Soybean	plasma membrane	67.58	68.21
PGSC0003DMT400032136	Potato	plasma membrane	67.95	68.2
CDY45351	Canola	plasma membrane	67.22	68.09
Bra027793.1-P	Field mustard	plasma membrane	67.22	68.09
KRH65010	Soybean	plasma membrane	67.4	67.9
CDY08318	Canola	plasma membrane	66.85	67.72
CDX90049	Canola	plasma membrane	65.75	66.48
CDY15163	Canola	plasma membrane	65.75	66.48
CDY38021	Canola	plasma membrane	65.57	66.3
Bra032646.1-P	Field mustard	plasma membrane	65.2	66.05
Solyc01g094680.2.1	Tomato	plasma membrane	65.02	65.86
KRH27921	Soybean	plasma membrane	64.84	65.19
AT1G01650.1	Thale cress	plasma membrane	64.29	65.0
Solyc10g012430.2.1	Tomato	plasma membrane	63.19	63.65
KRH77552	Soybean	plasma membrane	41.21	60.32
KRH54524	Soybean	plasma membrane	26.01	56.13
KRH66530	Soybean	golgi, plasma membrane, plastid	18.86	52.55
TraesCS7A01G003000.1	Wheat	plasma membrane	47.44	48.41
TraesCS4A01G495600.2	Wheat	plasma membrane	47.25	47.87
TraesCS4A01G495400.1	Wheat	peroxisome, plasma membrane, vacuole	28.39	44.93
TraesCS7A01G003200.1	Wheat	plasma membrane	34.43	38.92
TraesCS3A01G420400.2	Wheat	plasma membrane	38.28	37.86
TraesCS7A01G280600.1	Wheat	plasma membrane	17.22	25.27
TraesCS6A01G048100.2	Wheat	plasma membrane	15.38	24.56
KRH61017	Soybean	cytosol	31.14	21.82

Protein Annotations

EnsemblPlants:TraesCS6A01G406000.1	EnsemblPlantsGene:TraesCS6A01G406000	Gene3D:3.50.30.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:PA_domain	InterPro:Peptidase_A22B_SPP
InterPro:Preselin/SPP	PANTHER:PTHR12174	PANTHER:PTHR12174:SF61	PFAM:PF02225	PFAM:PF04258	SEG:seg
SignalP:SignalP-noTM	SMART:SM00730	SUPFAM:SSF52025	TMHMM:TMhelix	MapMan:18.10.1.4	:

Description

No Description!

Coordinates

chr6A:-:611563821..611569193

Molecular Weight (calculated)

59611.4 Da

IEP (calculated)

6.725

GRAVY (calculated)

0.456

Length

546 amino acids

Sequence
(BLAST)

001: MGAGARATAA ALLLVAAALA GVAAGGDIVH QDDDAPKIPG CSNDFMLVKV QTWVKNRETD EFVGVGARFG PIIESKEKHA NRTGLLIADP FDCCTPLKEK
101: VAGEVLLVQR GDCKFTTKAK VAEDAGASAI IILNNRHELY KMVCDQNETD LDINIPAVLL PKDAGTILQG LLSLGKVSVQ LYSPDRPLVD TAEVFLWLMA
201: VGTILGASYW SAWSAREALI EQEKLLKDGH ESSVNIEAEG SSGMVDITMT SAMLFIVVAS LFLVMLYKLM SHWFVELLVV IFCIGGVEGL QTCLVALLSR
301: WFKPAARSFV KVPFFGAVSY LTLAVCPFCI VSAVLWAVYR RMPYAWIGQD VLGIALIVTV IQIVRIPNLK VGSVLLGCSF LYDIFWVFIS KMLFHESVMI
401: VVARGDNTDE DGVPMLLKIP RMFDPWGGYS IIGFGDILLP GLLVAFALRY DWAARKTLQS GYFLWSMVAY GSGLLITYVA LNLMDGHGQP ALLYIVPFTL
501: GTFISLGKKR GELRNLWMKG QPPRVCTHSH HPLKDSADSA SHVISS

Best Arabidopsis Sequence Match ( AT1G63690.1 )
(BLAST)

001: MDSLRFLRIL LLSSSILLLS LRSTVTAGDI VHQDNLAPKK PGCENDFVLV KVQTWIDGVE NEEFVGVGAR FGKRIVSKEK NANQTHLVFA NPRDSCTPLK
101: NKLSGDVVIV ERGNCRFTAK ANNAEAAGAS ALLIINNQKE LYKMVCEPDE TDLDIQIPAV MLPQDAGASL QKMLANSSKV SAQLYSPRRP AVDVAEVFLW
201: LMAIGTILCA SYWSAWSARE AAIEHDKLLK DAIDEIPNTN DGGSGVVEIN SISAIFFVVL ASGFLVILYK LMSYWFVELL VVVFCIGGVE GLQTCLVALL
301: SRWFQRAADT YVKVPFLGPI SYLTLAVSPF CIVFAVLWAV YRVHSFAWIG QDVLGIALII TVLQIVHVPN LKVGTVLLSC AFLYDIFWVF VSKKLFHESV
401: MIVVARGDKS GEDGIPMLLK IPRMFDPWGG YSIIGFGDIL LPGLLIAFAL RYDWLANKTL RTGYFIWAMV AYGLGLLITY VALNLMDGHG QPALLYIVPF
501: TLGTMLTLAR KRDDLWILWT KGEPERACPH HVRLEQCSEK

Arabidopsis Description

SPPL2Signal peptide peptidase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W469]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.