Factsheet for VIT_15s0046g02460.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g02640.t01	Wine grape	golgi, plasma membrane, plastid	26.4	94.0
KRH40447	Soybean	plasma membrane	79.78	79.04
KRH00766	Soybean	plasma membrane	79.59	78.85
GSMUA_Achr4P12000_001	Banana	plasma membrane	78.28	78.72
KRH48125	Soybean	plasma membrane	79.21	78.19
VIT_02s0025g03400.t01	Wine grape	plasma membrane	79.78	77.74
Bra033245.1-P	Field mustard	plasma membrane	71.72	77.53
KRH65010	Soybean	plasma membrane	78.65	77.49
GSMUA_Achr10P...	Banana	plasma membrane	75.66	75.94
AT1G01650.1	Thale cress	plasma membrane	76.03	75.19
Solyc01g094680.2.1	Tomato	plasma membrane	75.84	75.14
CDX90049	Canola	plasma membrane	75.84	75.0
CDY15163	Canola	plasma membrane	75.84	75.0
CDY38021	Canola	plasma membrane	75.84	75.0
Solyc10g012430.2.1	Tomato	plasma membrane	75.66	74.54
Bra032646.1-P	Field mustard	plasma membrane	74.72	74.03
Zm00001d014901_P001	Maize	plasma membrane	73.6	73.32
EER90450	Sorghum	plasma membrane	72.85	72.57
Os02t0823000-01	Rice	plasma membrane	72.85	71.38
Os06t0730900-01	Rice	plasma membrane	71.16	70.11
EES06047	Sorghum	plasma membrane	70.97	69.29
TraesCS6A01G406000.1	Wheat	plasma membrane	70.79	69.23
TraesCS6D01G389600.1	Wheat	plasma membrane	70.79	69.23
TraesCS6B01G451100.1	Wheat	plasma membrane	70.6	69.05
TraesCS7D01G543700.1	Wheat	plasma membrane	70.6	68.67
TraesCS7A01G568900.1	Wheat	plasma membrane	70.79	66.9
Zm00001d051873_P002	Maize	plasma membrane	68.35	66.61
TraesCS7B01G489700.3	Wheat	plasma membrane, vacuole	70.79	66.08
HORVU7Hr1G122650.3	Barley	nucleus, plasma membrane	70.6	61.7
TraesCS4D01G010500.1	Wheat	plasma membrane	48.5	55.34
VIT_05s0062g01250.t01	Wine grape	plasma membrane	48.88	48.97
VIT_03s0097g00390.t01	Wine grape	mitochondrion	11.8	28.64
VIT_06s0009g03520.t01	Wine grape	plasma membrane	15.73	24.63
VIT_16s0050g00580.t01	Wine grape	endoplasmic reticulum, plasma membrane	16.1	23.18

Protein Annotations

EntrezGene:100258476	wikigene:100258476	MapMan:18.10.1.4	Gene3D:3.50.30.30	MEROPS:A22.A03	MEROPS:A22.A05
ProteinID:CBI40384	ProteinID:CBI40384.3	UniProt:D7UCB9	EMBL:FN596755	GO:GO:0003674	GO:GO:0003824
GO:GO:0004190	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764
GO:GO:0005765	GO:GO:0005773	GO:GO:0005783	GO:GO:0005794	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	GO:GO:0030660
GO:GO:0071458	GO:GO:0071556	EntrezGene:LOC100258476	wikigene:LOC100258476	InterPro:PA_domain	PFAM:PF02225
PFAM:PF04258	PANTHER:PTHR12174	PANTHER:PTHR12174:SF58	InterPro:Peptidase_A22B_SPP	InterPro:Preselin/SPP	SMART:SM00730
SUPFAM:SSF52025	SignalP:SignalP-noTM	TIGR:TC66298	TMHMM:TMhelix	UniParc:UPI00015CAB19	ArrayExpress:VIT_15s0046g02460
EnsemblPlantsGene:VIT_15s0046g02460	EnsemblPlants:VIT_15s0046g02460.t01	unigene:Vvi.14691	RefSeq:XP_002274726	RefSeq:XP_002274726.1	SEG:seg

Description

No Description!

Coordinates

chr15:-:19232996..19241683

Molecular Weight (calculated)

58771.0 Da

IEP (calculated)

5.773

GRAVY (calculated)

0.451

Length

534 amino acids

Sequence
(BLAST)

001: MDSPRNLLLL FVLLVCTLTV AFAGDIVHQD DIAPKKPGCE NNFVLVKVPT WVDHEEGNEY VGVGARFGPT LESKEKHANQ TTLTLADPPD CCSTPKNKLT
101: GEVILVYRGN CSFTNKAKVA ENAGASAVLI VNNQTELFKM VCEANETAIN ISIPVVMLPQ DAGASLEKSL KNNSSVAVQL YSPKRPLVDI AEVFLWLMAV
201: GTILSASYWS AWSAREAANE QDKLLKDASD EFLSTEGTGS SGMVDINTTS AVLFVVIASC FLVMLYKLMS FWFVEVLVVL FCIGGVEGLQ TCLVALLSCF
301: RWFEQAAESF VKVPFFGAVS YLTLAVSPFC IAFAVVWAVF RRINFAWIGQ DILGIALIIT VLQIVRVPNL KVGTVLLSCA FLYDIFWVFV SKWWFNESVM
401: IVVARGDRSG EDGIPMLLKI PRMFDPWGGY SIIGFGDIIL PGLLVAFSLR YDWLAKKSLR AGYFVWAMTA YGLGLLITYV ALNLMDGHGQ PALLYIVPFT
501: LGTFLALGKK RGDLKTLWTK GEPERPCPHI QPSQ

Best Arabidopsis Sequence Match ( AT1G01650.1 )
(BLAST)

001: MILWKSLSCF SFVFGLLLYS ASFVCAGDIV HHDDSLPQRP GCNNNFVLVK VPTRVNGSEY TEYVGVGARF GPTLESKEKH ATLIKLAIAD PPDCCSTPKN
101: KLTGEVILVH RGKCSFTTKT KVAEAAGASA ILIINNSTDL FKMVCEKGEN VLDITIPVVM LPVDAGRSLE NIVKSNAIVT LQLYSPKRPA VDVAEVFLWL
201: MAVGTILCAS YWSAWTVREE AIEQDKLLKD GSDELLQLST TSSRGVVEVT VISAILFVVV ASCFLIMLYK LMSFWFIEVL VVLFCIGGVE GLQTCLVSLL
301: SCFRWFRRFG ESYVKVPFLG AVSYLTLAIC PFCIAFAVFW AVKRQYSYAW IGQDILGISL IITVLQIVRV PNLKVGFVLL SCAFMYDIFW VFVSKWWFRE
401: SVMIVVARGD RSGEDGIPML LKIPRMFDPW GGYSIIGFGD IILPGLLVTF ALRYDWLANK RLKSGYFLGT MSAYGLGLLI TYIALNLMDG HGQPALLYIV
501: PFILGTLFVL GHKRGDLKTL WTTGEPDRPC PHVRLQPQSS

Arabidopsis Description

SPPL4Signal peptide peptidase-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WMJ8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.