Factsheet for VIT_16s0050g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35289	Soybean	endoplasmic reticulum, plasma membrane	85.71	85.48
KRG91538	Soybean	endoplasmic reticulum, plasma membrane	85.44	85.22
CDY71437	Canola	plasma membrane	82.21	82.66
AT4G33410.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	82.75	82.53
Bra011437.1-P	Field mustard	endoplasmic reticulum, plasma membrane	82.48	82.26
CDY46118	Canola	endoplasmic reticulum, plasma membrane	81.67	82.11
CDX75349	Canola	plasma membrane	82.21	81.99
CDX68973	Canola	endoplasmic reticulum, plasma membrane	81.94	81.72
CDX72401	Canola	endoplasmic reticulum, plasma membrane	81.13	81.57
Bra037008.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	80.59	81.03
Bra036397.1-P	Field mustard	plasma membrane	31.54	80.14
Solyc03g025550.2.1	Tomato	plasma membrane	81.4	80.11
PGSC0003DMT400040816	Potato	plasma membrane	74.93	78.09
Zm00001d049930_P003	Maize	endoplasmic reticulum, plasma membrane, vacuole	77.09	77.09
KXG25380	Sorghum	plasma membrane	76.28	76.28
Os10t0393100-01	Rice	plasma membrane	76.28	76.28
Zm00001d031933_P003	Maize	endoplasmic reticulum, plasma membrane, vacuole	76.01	75.81
HORVU7Hr1G059420.1	Barley	plasma membrane	75.2	75.0
TraesCS7D01G279200.2	Wheat	plasma membrane	74.93	74.73
TraesCS7B01G181000.2	Wheat	plasma membrane	74.93	74.73
TraesCS7A01G280600.1	Wheat	plasma membrane	74.93	74.73
GSMUA_Achr3P14450_001	Banana	endoplasmic reticulum, plasma membrane	74.66	74.46
CDX67547	Canola	plasma membrane	34.23	72.57
Bra025596.1-P	Field mustard	plasma membrane	34.5	55.65
CDY29483	Canola	cytosol	20.75	47.53
VIT_06s0009g03520.t01	Wine grape	plasma membrane	27.22	29.62
VIT_05s0062g01250.t01	Wine grape	plasma membrane	24.26	16.89
VIT_15s0046g02460.t01	Wine grape	plasma membrane	23.18	16.1
VIT_02s0025g03400.t01	Wine grape	plasma membrane	23.18	15.69
VIT_02s0012g02640.t01	Wine grape	golgi, plasma membrane, plastid	4.85	12.0
VIT_03s0097g00390.t01	Wine grape	mitochondrion	4.04	6.82

Protein Annotations

EntrezGene:100245846	wikigene:100245846	MapMan:18.10.1.4	MEROPS:A22.A14	UniProt:A5BNP3	EMBL:AM465880
ProteinID:CAN83442	ProteinID:CAN83442.1	ProteinID:CBI22709	ProteinID:CBI22709.3	EMBL:FN595243	GO:GO:0003674
GO:GO:0003824	GO:GO:0004190	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005764	GO:GO:0005765	GO:GO:0005768	GO:GO:0005773	GO:GO:0005783	GO:GO:0005794
GO:GO:0005802	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	GO:GO:0030660	GO:GO:0071458	GO:GO:0071556	EntrezGene:LOC100245846
wikigene:LOC100245846	PFAM:PF04258	PANTHER:PTHR12174	PANTHER:PTHR12174:SF22	InterPro:Peptidase_A22B_SPP	InterPro:Preselin/SPP
SMART:SM00730	TIGR:TC55567	TMHMM:TMhelix	UniParc:UPI0001524691	ArrayExpress:VIT_16s0050g00580	EnsemblPlantsGene:VIT_16s0050g00580
EnsemblPlants:VIT_16s0050g00580.t01	unigene:Vvi.5237	RefSeq:XP_002268346	RefSeq:XP_002268346.1	RefSeq:XP_010662729.1	SEG:seg

Description

No Description!

Coordinates

chr16:+:17534568..17540342

Molecular Weight (calculated)

40630.6 Da

IEP (calculated)

8.145

GRAVY (calculated)

0.649

Length

371 amino acids

Sequence
(BLAST)

001: MEPLWKLLYL LEPAPVTLVL TAVAVTFGSA LRALNYGKEM ERNRDLSEAS ITLDRSQALM IPIMSSCSLL LMFYLFSSVS QLLTAFTAVA SASSLFFCLS
101: PYVMYLKSQL GLPDPFVSRC CSKSFTRIQG LLLLLCSGIV AAWLVSGHWI LNNLLGISIC IAFVSHVRLQ NIKICAMLLA CLFVYDIFWV FFSERFFGAN
201: VMVSVATQQA SNPVHTVANS LSLPGLQLIT KKLELPVKIV FPRNLFGGVV PGGNSADFMM LGLGDMAIPA MLLALVLCFD HRKSRDSVSP LDIPSAKGHK
301: YIWYALSGYA IGLVTALAAG VLTHSPQPAL LYLVPATLGP IIFVSWIRKE LAELWEGTMP DQNDKAHLTE V

Best Arabidopsis Sequence Match ( AT4G33410.1 )
(BLAST)

001: METLWTLLYL LEPAPATLIV TAVTVTFASA FRALNYGKEM ERNRDFSEAS ITLDSSQALM IPVMSSCSLL LMFYLFSSVS QLLTAFTAIA SVSSLFYWLS
101: PYAVYMKTQL GLSDPFLSRC CSKSFTRIQG LLLVACAMTV VAWLISGHWV LNNLLGISIC IAFVSHVRLP NIKICAMLLV CLFVYDIFWV FFSERFFGAN
201: VMVAVATQQA SNPVHTVANS LNLPGLQLIT KKLELPVKIV FPRNLLGGVV PGVSASDFMM LGLGDMAIPA MLLALVLCFD HRKTRDVVNI FDLKSSKGHK
301: YIWYALPGYA IGLVAALAAG VLTHSPQPAL LYLVPSTLGP VIFMSWRRKD LAELWEGPAL SNPIEKSHEI EI

Arabidopsis Description

SPPL1Signal peptide peptidase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z32]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.