CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, golgi

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039387.1-P	Field mustard	cytosol, golgi, nucleus, plastid	90.48	90.25
CDY24192	Canola	plastid	51.88	68.32
CDX75706	Canola	cytosol, golgi, nucleus	59.9	56.9
CDX82542	Canola	plastid	56.14	50.56
AT3G13360.2	Thale cress	extracellular, plasma membrane, vacuole	55.89	43.05
CDX89333	Canola	nucleus	29.07	23.43
CDY17403	Canola	nucleus	15.54	22.46
VIT_19s0015g01790.t01	Wine grape	nucleus	34.34	22.31
CDX94330	Canola	nucleus	27.07	22.0
CDY32806	Canola	cytosol, golgi, nucleus	15.29	21.86
KRH62532	Soybean	endoplasmic reticulum	31.33	21.37
PGSC0003DMT400022426	Potato	nucleus	31.08	21.16
KRH56393	Soybean	cytosol	31.08	21.12
Solyc07g066170.2.1	Tomato	nucleus	17.54	20.9
PGSC0003DMT400056956	Potato	nucleus	30.83	20.57
Os04t0471300-01	Rice	cytosol, golgi, nucleus	15.54	20.53
TraesCS2B01G351300.1	Wheat	cytosol, golgi, nucleus	15.04	20.13
TraesCS7A01G240200.1	Wheat	cytosol	26.07	19.12
TraesCS5B01G256500.1	Wheat	cytosol, golgi, nucleus, plastid	25.81	18.86
TraesCS7B01G135800.1	Wheat	cytosol, golgi, nucleus	25.06	18.59
Zm00001d005997_P002	Maize	plastid	24.81	18.4
GSMUA_Achr4P01630_001	Banana	cytosol, golgi, nucleus	27.32	18.32
GSMUA_Achr10P...	Banana	cytosol	23.06	18.25
TraesCS7D01G238200.1	Wheat	cytosol	24.56	18.25
Os08t0497900-01	Rice	nucleus	21.05	18.18
TraesCS5A01G257000.1	Wheat	cytosol, golgi, nucleus, plastid	24.81	18.17
Zm00001d020879_P001	Maize	cytosol, golgi, nucleus, plastid	18.05	17.96
EER96942	Sorghum	cytosol, golgi, nucleus, plastid	24.31	17.9
HORVU5Hr1G071910.1	Barley	nucleus	24.56	17.88
Zm00001d003334_P001	Maize	cytosol, nucleus, plastid	13.78	17.86
HORVU7Hr1G048940.3	Barley	cytosol	25.31	17.69
TraesCS5D01G265600.1	Wheat	nucleus	24.06	17.39
GSMUA_Achr3P04120_001	Banana	nucleus	25.56	17.17
EES14314	Sorghum	nucleus	21.3	16.8
OQU81760	Sorghum	nucleus	17.79	16.67
HORVU2Hr1G081800.3	Barley	cytosol, nucleus	19.05	16.45
TraesCS2A01G331000.1	Wheat	cytosol	19.3	15.1
TraesCS2D01G332000.1	Wheat	cytosol	18.8	14.71
Os09t0481300-01	Rice	nucleus	19.3	14.61
Zm00001d025667_P001	Maize	cytosol	17.04	13.93

Protein Annotations

EnsemblPlants:CDY43354	EnsemblPlantsGene:GSBRNA2T00076420001	GO:A0A078I171	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR34562	PANTHER:PTHR34562:SF1	ProteinID:CDY43354	ProteinID:CDY43354.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EDAE35	UniProt:A0A078I171	MapMan:20.4.2.1.2	:	:

Description

BnaA01g29850DBnaA01g29850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I171]

Coordinates

chrLK032554:+:31584..33333

Molecular Weight (calculated)

43572.3 Da

IEP (calculated)

6.845

GRAVY (calculated)

-0.602

Length

399 amino acids

Sequence
(BLAST)

001: MEKVSVNGVQ VSPDDGIGSP QRSSSVDSLK VESPGGSTRK GFGLKKWRRI KRDTPVKDES AAPVDDGSKL LKRNLTGLVN PPSKHVDLSS VEARQGSEGS
101: VGSVNMMAHH HHHLLPSVVN GFSPGPGLFN VGQGFEKSEE HSGGGKIDSG SQGRDTIKKG SEERIDSDLR SSDFVFSSGA VSAANRIADG QEARELVETY
201: SRSENGGEGG DESHKKKNNH YQADKDHVAD SIRCLAALQE ALWKEVTSFQ ELSKESIPPL HSSTDEVDSG SQVLILKQKV KHLQHKFEEA RADLDTKEAR
301: IQELENAKIE AELEGVFQRK IEAEIQHLML RSSLNSTLLK EHPKKVHSVA EDPEPNRGNM LGKTCKSSFY FLIQLILLVS IVRLLLLQSS PASQLVIPT

Best Arabidopsis Sequence Match ( AT3G13360.2 )
(BLAST)

001: MFFFSCVCRI ISSTLIIFVD TASPGNNVGG FLRRTLNSLG FCFSCSSVTQ ASSRWIVLGM NESVPDSVED NGNSVPANGL LVLPDNDHEE GGVGSPQRSN
101: SVESPGGSVH STRKGFGLKK WRRIKRDGPV RDEAAPVDDG SKLLKRGLAG LVNPPSKHVE FSSVEARQSS EGSVGSVNMV HHPGVANGFS PDIGCMFAVG
201: QAFEKSEEHS GNTIGGKNVV GGKVVSGSQE KLWSDTIKRA SEERGDIEKE KPCSSLDSDL RSSDFVFSTG SVSVGNHGEK DERLTMNYIG GFSNEGQVKE
301: EVQTYSRSEN GNKEDDGESK KNNNHWADKD ALADSIRSFA VLQEVLWKEV QSFQELGKES VLLHSNTDEL SSDQPSHQNC KEDNSTSSGS KALILKEKVK
401: LLEHKLEEAR AALEAKEARI QELENSKIES ELECIFQRKI ETEIEHLMLT RSLSSLQVLQ ETKKLHSLKE DPVSNRGNIL GKTCKLGFYI LTQLILLVSI
501: LRFLVLQFSP ASRLVIPT

Arabidopsis Description

WIP3WPP domain interacting protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSR4]
SUBAcon: [extracellular,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.