Factsheet for PGSC0003DMT400015184

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 8
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50430.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G50430.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G50430.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G50430.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G50430.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074090.2.1	Tomato	nucleus	97.7	97.7
PGSC0003DMT400038174	Potato	mitochondrion, plasma membrane	83.87	83.87
VIT_09s0054g00930.t01	Wine grape	plasma membrane	81.8	81.8
Bra030492.1-P	Field mustard	extracellular, plasma membrane	25.12	78.99
CDY03603	Canola	plasma membrane	78.34	78.7
Bra014252.1-P	Field mustard	plasma membrane	78.11	78.47
CDY45061	Canola	plasma membrane	78.11	78.47
AT1G50430.1	Thale cress	plasma membrane	77.88	78.24
KRH44662	Soybean	endoplasmic reticulum	77.88	78.24
GSMUA_Achr6P30910_001	Banana	plasma membrane	77.19	77.19
TraesCS3D01G484700.1	Wheat	golgi, peroxisome, plasma membrane	77.19	73.46
Os02t0465400-01	Rice	plasma membrane	76.04	73.33
EES05015	Sorghum	plasma membrane	76.5	73.13
TraesCS3A01G488600.1	Wheat	plasma membrane	76.27	72.91
TraesCS3B01G536500.1	Wheat	plasma membrane	76.04	72.37
Zm00001d016463_P001	Maize	plastid	75.35	70.47
CDY29319	Canola	plasma membrane	61.98	64.66
HORVU3Hr1G107040.11	Barley	plastid	76.96	62.55
Bra041028.1-P	Field mustard	plasma membrane	46.77	59.36
CDY07287	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.43	55.56
CDY07286	Canola	endoplasmic reticulum, plasma membrane, vacuole	25.81	36.25
PGSC0003DMT400007043	Potato	endoplasmic reticulum	24.19	28.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400015184	EnsemblPlantsGene:PGSC0003DMG400005931	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016628	GO:GO:0055114	InterPro:Ergosterol_biosynth_ERG4_ERG24
InterPro:Sterol_reductase_CS	PANTHER:PTHR21257	PANTHER:PTHR21257:SF38	PFAM:PF01222	PGSC:PGSC0003DMG400005931	ScanProsite:PS01018
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002953502	UniProt:M1A5L3	MapMan:5.5.1.6	:

Description

Sterol delta-7 reductase DWF5 [Source:PGSC_GENE;Acc:PGSC0003DMG400005931]

Coordinates

chr6:+:54670203..54676242

Molecular Weight (calculated)

49748.0 Da

IEP (calculated)

8.739

GRAVY (calculated)

0.233

Length

434 amino acids

Sequence
(BLAST)

001: MAESQLVHPP LFTYISMLAL LTLVPPFVIL MWYTNVHADG SVLQTFNYLK ENGLQGLIDI WPRPTAIAGK IIICYALFEA TLQLLLPGKR VQGPISPTGH
101: RPVYKANGMA AYTVTLITYL SLWWFGIFNP TVVYDHLGEI LSTLNFGSLI FCLFLYIKGH VAPSSTDHGS SGNIIVDYYW GMELYPRIGK HFDIKVFTNC
201: RFGMISWGLL PITYCIKQYE EYGSLSDSML IHTIITLVYV TKFFWWEAGY WNTMDIAHDR AGFYICWGCL VFLPCMYTSP GMYLVKHPVN LGPQLAISIL
301: VAGILCVYIN YDCDRQRQEF RRTNGKALVW GKAPSKIVAS YTTTTGETKS SLLLTSGWWG LSRHFHYVPE ILASFFWSVP ALFNHIMPYF YVIYLTGLLL
401: DRAKRDDERC KSKYGKYWKK YCEKVPYRVV PGIY

Best Arabidopsis Sequence Match ( AT1G50430.1 )
(BLAST)

001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY

Arabidopsis Description

DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.