CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX84933
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY03907
CDY09128
CDY15722
CDY27605
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50430.1	CDX84933	AT1G27300.1	21798944
AT1G50430.1	CDY03907	AT1G27300.1	21798944
AT1G50430.1	CDY15722	AT1G27300.1	21798944
AT1G50430.1	CDY27605	AT1G27300.1	21798944
AT1G50430.1	CDX78905	AT4G19030.1	21798944
AT1G50430.1	CDX98596	AT4G19030.1	21798944
AT1G50430.1	CDX99411	AT4G19030.1	21798944
AT1G50430.1	CDY01565	AT4G19030.1	21798944
AT1G50430.1	CDX70995	AT5G22290.1	21798944
AT1G50430.1	CDX88803	AT5G22290.1	21798944
AT1G50430.1	CDX92368	AT5G22290.1	21798944
AT1G50430.1	CDY09128	AT5G22290.1	21798944
AT1G50430.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03603	Canola	plasma membrane	77.88	75.0
CDY45061	Canola	plasma membrane	77.88	75.0
Bra041028.1-P	Field mustard	plasma membrane	61.3	74.56
AT1G50430.1	Thale cress	plasma membrane	76.92	74.07
VIT_09s0054g00930.t01	Wine grape	plasma membrane	70.91	67.97
KRH44662	Soybean	endoplasmic reticulum	68.51	65.97
Solyc01g009310.2.1	Tomato	nucleus, plasma membrane	68.03	65.21
PGSC0003DMT400038174	Potato	mitochondrion, plasma membrane	68.03	65.21
GSMUA_Achr6P30910_001	Banana	plasma membrane	67.79	64.98
Os02t0465400-01	Rice	plasma membrane	69.23	64.0
EES05015	Sorghum	plasma membrane	69.47	63.66
PGSC0003DMT400015184	Potato	plasma membrane	64.66	61.98
Solyc06g074090.2.1	Tomato	nucleus	64.42	61.75
TraesCS3A01G488600.1	Wheat	plasma membrane	66.59	61.01
TraesCS3D01G484700.1	Wheat	golgi, peroxisome, plasma membrane	66.83	60.96
Zm00001d016463_P001	Maize	plastid	67.55	60.56
TraesCS3B01G536500.1	Wheat	plasma membrane	66.35	60.53
CDY07287	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.51	53.47
HORVU3Hr1G107040.11	Barley	plastid	67.31	52.43
CDY07286	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.88	37.54
CDX67552	Canola	endoplasmic reticulum, plasma membrane, vacuole	12.98	23.38
CDY70397	Canola	endoplasmic reticulum, plasma membrane	20.19	22.76
CDX67551	Canola	endoplasmic reticulum, extracellular	7.93	22.6
CDY66282	Canola	plasma membrane	19.71	22.28
CDX76247	Canola	plasma membrane	18.99	22.25
CDY13326	Canola	plasma membrane	12.02	21.64

Protein Annotations

EnsemblPlants:CDY29319	EnsemblPlantsGene:GSBRNA2T00042869001	GO:A0A078GVX9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Ergosterol_biosynth_ERG4_ERG24	PANTHER:PTHR21257	PANTHER:PTHR21257:SF38	PFAM:PF01222	ProteinID:CDY29319	ProteinID:CDY29319.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE4919	UniProt:A0A078GVX9	MapMan:5.5.1.6	:

Description

BnaA05g15860DBnaA05g15860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVX9]

Coordinates

chrLK032235:+:8562..12091

Molecular Weight (calculated)

47041.2 Da

IEP (calculated)

8.654

GRAVY (calculated)

0.567

Length

416 amino acids

Sequence
(BLAST)

001: MAETVHSPIV AFASMLSLLA LCPPFVILLW FTRMVLLFRL QTFGFLWENG VKGLINIWPR PTAIAWKIIF CYGAFEAALQ LLLPGKRVET DQFTRTMVWL
101: PILFGIFNPA IVYDHLGAIF SALIFGCFIF CVLLYVKGHV APSSSDSGSC GNLIIAFYWG MELYPRISKN FDIKIFTNCR FGMMSWAVLA ITYCIKQYEI
201: NGRVSDSMLV NTILMLVMDI AHDRAGFYIC WGCLVWVPSI YTSPGMYLVN HPVPLGTQLA IYILVAGILC IYINYDCDRQ RQEFRRTNGK CSVWGKAPSK
301: IVATYKTTAS ETKTSLLLTS GWWGLARHFH YVPEILSSFF WTVPALFSNF LPYFCVIYLT ILLFDRAKRD DQSMGNIGSC TAKKCDTGLF LVVSVVFSVF
401: VSFIMTGTSE RLKTTS

Best Arabidopsis Sequence Match ( AT1G50430.2 )
(BLAST)

001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WFGIFNPAIV YDHLGEIFSA LIFGSFIFCV LLYIKGHVAP SSSDSGSCGN LIIDFYWGME LYPRIGKSFD IKVFTNCRFG
201: MMSWAVLAVT YCIKQYEING KVSDSMLVNT ILMLVYVTKF FWWEAGYWNT MDIAHDRAGF YICWGCLVWV PSVYTSPGMY LVNHPVELGT QLAIYILVAG
301: ILCIYINYDC DRQRQEFRRT NGKCLVWGRA PSKIVASYTT TSGETKTSLL LTSGWWGLAR HFHYVPEILS AFFWTVPALF DNFLAYFYVI FLTLLLFDRA
401: KRDDDRCRSK YGKYWKLYCE KVKYRIIPGI Y

Arabidopsis Description

DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.