Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 7
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50430.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0054g00930.t01 | Wine grape | plasma membrane | 86.41 | 86.41 |
| Bra030492.1-P | Field mustard | extracellular, plasma membrane | 26.73 | 84.06 |
| CDY03603 | Canola | plasma membrane | 82.49 | 82.87 |
| Bra014252.1-P | Field mustard | plasma membrane | 82.26 | 82.64 |
| CDY45061 | Canola | plasma membrane | 82.26 | 82.64 |
| Os02t0465400-01 | Rice | plasma membrane | 85.48 | 82.44 |
| AT1G50430.1 | Thale cress | plasma membrane | 82.03 | 82.41 |
| KRH44662 | Soybean | endoplasmic reticulum | 82.03 | 82.41 |
| EES05015 | Sorghum | plasma membrane | 85.94 | 82.16 |
| Solyc01g009310.2.1 | Tomato | nucleus, plasma membrane | 80.65 | 80.65 |
| PGSC0003DMT400038174 | Potato | mitochondrion, plasma membrane | 80.65 | 80.65 |
| TraesCS3A01G488600.1 | Wheat | plasma membrane | 82.72 | 79.07 |
| TraesCS3D01G484700.1 | Wheat | golgi, peroxisome, plasma membrane | 82.95 | 78.95 |
| Zm00001d016463_P001 | Maize | plastid | 84.1 | 78.66 |
| TraesCS3B01G536500.1 | Wheat | plasma membrane | 82.26 | 78.29 |
| Solyc06g074090.2.1 | Tomato | nucleus | 77.42 | 77.42 |
| PGSC0003DMT400015184 | Potato | plasma membrane | 77.19 | 77.19 |
| HORVU3Hr1G107040.11 | Barley | plastid | 84.33 | 68.54 |
| CDY29319 | Canola | plasma membrane | 64.98 | 67.79 |
| Bra041028.1-P | Field mustard | plasma membrane | 51.61 | 65.5 |
| CDY07287 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 16.82 | 50.69 |
| CDY07286 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 27.88 | 39.16 |
| GSMUA_Achr3P22830_001 | Banana | plasma membrane | 23.96 | 27.44 |
Protein Annotations
| Gene3D:1.20.120.1630 | MapMan:5.5.1.6 | InterPro:Ergosterol_biosynth_ERG4_ERG24 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006629 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009918 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016132 | GO:GO:0016628 | GO:GO:0055114 | EnsemblPlantsGene:GSMUA_Achr6G30910_001 | EnsemblPlants:GSMUA_Achr6P30910_001 | EnsemblPlants:GSMUA_Achr6T30910_001 |
| UniProt:M0TBN6 | PFAM:PF01222 | ScanProsite:PS01017 | ScanProsite:PS01018 | PANTHER:PTHR21257 | PANTHER:PTHR21257:SF38 |
| InterPro:Sterol_reductase_CS | TMHMM:TMhelix | UniParc:UPI000295EEE6 | SEG:seg | : | : |
Description
7-dehydrocholesterol reductase [Source:GMGC_GENE;Acc:GSMUA_Achr6G30910_001]
Coordinates
chr6:+:30861102..30871688
Molecular Weight (calculated)
49506.7 Da
IEP (calculated)
8.538
GRAVY (calculated)
0.318
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESKTVHSA LVTYTSVISL LTLCPPFVIL LWYTMVHADG SVLQTFEYLK QHGLQGLKDI LPAPSPIAWK LIACFGAFEA ILQLALPGKR VEGPISPNGN
101: IPVYKANGLQ AYAVTLVTYL SLWWFGIFNP AIVYDHLGEI YSALVMGSLV FCLFLYLKGH VAPSSSDSGS SGNFIIDFYW GMELYPRIGK HFDIKVFTNC
201: RFGMMSWAVL AVTYCIKQYE MNGQVSDSML VNTVLMLVYI TKFFWWEAGY WCTMDIAHDR AGFYICWGCL VWVPSIYTSP GMYLVNHPVS LGTQLALFIL
301: VSGLLCIYIN YDCDRQRQEF RRTNGKCLIW GKAPSKIVAS YRTEKGETKT SLLLTSGWWG VSRHFHYVPE ILAAFFWTVP ALFNHFLPYF YVLFLTILLF
401: DRAKRDDDRC ASKYGKYWKM YCNKVPYRVI PGIH
101: IPVYKANGLQ AYAVTLVTYL SLWWFGIFNP AIVYDHLGEI YSALVMGSLV FCLFLYLKGH VAPSSSDSGS SGNFIIDFYW GMELYPRIGK HFDIKVFTNC
201: RFGMMSWAVL AVTYCIKQYE MNGQVSDSML VNTVLMLVYI TKFFWWEAGY WCTMDIAHDR AGFYICWGCL VWVPSIYTSP GMYLVNHPVS LGTQLALFIL
301: VSGLLCIYIN YDCDRQRQEF RRTNGKCLIW GKAPSKIVAS YRTEKGETKT SLLLTSGWWG VSRHFHYVPE ILAAFFWTVP ALFNHFLPYF YVLFLTILLF
401: DRAKRDDDRC ASKYGKYWKM YCNKVPYRVI PGIH
001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY
Arabidopsis Description
DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.