CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX84933
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY03907
CDY09128
CDY15722
CDY27605
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50430.1	CDX84933	AT1G27300.1	21798944
AT1G50430.1	CDY03907	AT1G27300.1	21798944
AT1G50430.1	CDY15722	AT1G27300.1	21798944
AT1G50430.1	CDY27605	AT1G27300.1	21798944
AT1G50430.1	CDX78905	AT4G19030.1	21798944
AT1G50430.1	CDX98596	AT4G19030.1	21798944
AT1G50430.1	CDX99411	AT4G19030.1	21798944
AT1G50430.1	CDY01565	AT4G19030.1	21798944
AT1G50430.1	CDX70995	AT5G22290.1	21798944
AT1G50430.1	CDX88803	AT5G22290.1	21798944
AT1G50430.1	CDX92368	AT5G22290.1	21798944
AT1G50430.1	CDY09128	AT5G22290.1	21798944
AT1G50430.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030492.1-P	Field mustard	extracellular, plasma membrane	26.39	27.54
CDY03603	Canola	plasma membrane	71.53	23.84
CDY45061	Canola	plasma membrane	71.53	23.84
AT1G50430.1	Thale cress	plasma membrane	69.44	23.15
VIT_09s0054g00930.t01	Wine grape	plasma membrane	56.94	18.89
CDY29319	Canola	plasma membrane	53.47	18.51
Solyc06g074090.2.1	Tomato	nucleus	55.56	18.43
Solyc01g009310.2.1	Tomato	nucleus, plasma membrane	55.56	18.43
PGSC0003DMT400038174	Potato	mitochondrion, plasma membrane	55.56	18.43
PGSC0003DMT400015184	Potato	plasma membrane	55.56	18.43
KRH44662	Soybean	endoplasmic reticulum	54.17	18.06
Os02t0465400-01	Rice	plasma membrane	55.56	17.78
EES05015	Sorghum	plasma membrane	53.47	16.96
GSMUA_Achr6P30910_001	Banana	plasma membrane	50.69	16.82
TraesCS3A01G488600.1	Wheat	plasma membrane	49.31	15.64
TraesCS3D01G484700.1	Wheat	golgi, peroxisome, plasma membrane	49.31	15.57
Zm00001d016463_P001	Maize	plastid	50.0	15.52
TraesCS3B01G536500.1	Wheat	plasma membrane	48.61	15.35
HORVU3Hr1G107040.11	Barley	plastid	50.0	13.48
CDX67552	Canola	endoplasmic reticulum, plasma membrane, vacuole	15.28	9.52
CDY13326	Canola	plasma membrane	13.89	8.66
CDY70397	Canola	endoplasmic reticulum, plasma membrane	13.89	5.42
CDY66282	Canola	plasma membrane	13.19	5.16
CDX76247	Canola	plasma membrane	11.81	4.79
CDY07286	Canola	endoplasmic reticulum, plasma membrane, vacuole	1.39	0.65
CDX67551	Canola	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY07287	EnsemblPlantsGene:GSBRNA2T00124167001	GO:A0A078F2G1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Ergosterol_biosynth_ERG4_ERG24	PANTHER:PTHR21257	PANTHER:PTHR21257:SF38	PFAM:PF01222	ProteinID:CDY07287	ProteinID:CDY07287.1
TMHMM:TMhelix	UniParc:UPI0004EE9A4C	UniProt:A0A078F2G1	MapMan:35.1	:	:

Description

BnaC05g26490DBnaC05g26490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2G1]

Coordinates

chrLK031977:-:123916..124910

Molecular Weight (calculated)

16035.7 Da

IEP (calculated)

6.767

GRAVY (calculated)

0.456

Length

144 amino acids

Sequence
(BLAST)

001: MAETVHSPIV TFASMLSLLA LCPPFVILLP ARTIRDTDTL YELPCSLSEI FHSSGFLWEN GVKGLINIWP RPTAIAWKII FCYGAFEAAL QLLLPGKRVE
101: GPVSPTGNRP VYKDNGMAAY FVTLATYLGL WWFGIFNPAI VYDH

Best Arabidopsis Sequence Match ( AT1G50430.1 )
(BLAST)

001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY

Arabidopsis Description

DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.