Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 8
- endoplasmic reticulum 6
- vacuole 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0054g00930.t01 | Wine grape | plasma membrane | 85.88 | 85.48 |
| CDY03603 | Canola | plasma membrane | 84.26 | 84.26 |
| Bra014252.1-P | Field mustard | plasma membrane | 84.03 | 84.03 |
| AT1G50430.1 | Thale cress | plasma membrane | 84.03 | 84.03 |
| CDY45061 | Canola | plasma membrane | 84.03 | 84.03 |
| Bra030492.1-P | Field mustard | extracellular, plasma membrane | 26.62 | 83.33 |
| GSMUA_Achr6P30910_001 | Banana | plasma membrane | 82.41 | 82.03 |
| PGSC0003DMT400038174 | Potato | mitochondrion, plasma membrane | 82.18 | 81.8 |
| Solyc01g009310.2.1 | Tomato | nucleus, plasma membrane | 81.94 | 81.57 |
| Os02t0465400-01 | Rice | plasma membrane | 83.56 | 80.22 |
| EES05015 | Sorghum | plasma membrane | 82.87 | 78.85 |
| PGSC0003DMT400015184 | Potato | plasma membrane | 78.24 | 77.88 |
| Solyc06g074090.2.1 | Tomato | nucleus | 78.01 | 77.65 |
| TraesCS3D01G484700.1 | Wheat | golgi, peroxisome, plasma membrane | 80.32 | 76.1 |
| TraesCS3A01G488600.1 | Wheat | plasma membrane | 79.86 | 75.99 |
| Zm00001d016463_P001 | Maize | plastid | 81.25 | 75.65 |
| TraesCS3B01G536500.1 | Wheat | plasma membrane | 79.63 | 75.44 |
| CDY29319 | Canola | plasma membrane | 65.97 | 68.51 |
| HORVU3Hr1G107040.11 | Barley | plastid | 81.25 | 65.73 |
| Bra041028.1-P | Field mustard | plasma membrane | 51.85 | 65.5 |
| CDY07287 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 18.06 | 54.17 |
| CDY07286 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 27.78 | 38.84 |
| KRH20023 | Soybean | endoplasmic reticulum, plasma membrane | 23.61 | 27.27 |
| KRH32646 | Soybean | plasma membrane | 15.51 | 26.17 |
Protein Annotations
| Gene3D:1.20.120.1630 | EntrezGene:102659420 | MapMan:5.5.1.6 | EMBL:ACUP02004947 | EMBL:BT097584 | UniProt:C6TIU6 |
| InterPro:Ergosterol_biosynth_ERG4_ERG24 | EnsemblPlantsGene:GLYMA_08G224200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009918 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016126 | GO:GO:0016132 |
| GO:GO:0016628 | GO:GO:0030176 | GO:GO:0055114 | EnsemblPlants:KRH44662 | ProteinID:KRH44662 | ProteinID:KRH44662.1 |
| PFAM:PF01222 | ScanProsite:PS01017 | ScanProsite:PS01018 | PANTHER:PTHR21257 | PANTHER:PTHR21257:SF38 | InterPro:Sterol_reductase_CS |
| TMHMM:TMhelix | UniParc:UPI00001555C6 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:18186987..18190977
Molecular Weight (calculated)
49427.3 Da
IEP (calculated)
8.745
GRAVY (calculated)
0.291
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MGATVHSPLV TYASVISLLT LCPPFVILLW YTMTLADGSV SETFHYLRQN GLQGLLHIWP TPTPTACKII AVYAAFEAAL QLLLPGKTVY GPISPTGHRP
101: VYKANGLQAY FVTLITYFAL WWFGIFNPTI VYHHLGEIYS ALIFGSFLFC VFLYIKGHLA PSSTDSGSSG NLIIDFYWGM ELYPRIGKHF DIKVFTNCRF
201: GMMSWAVLAL TYCIKQYEEN GKVADSMLVN TALMLVYVTK FFWWEAGYWS TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVNLG IKLALSILVA
301: GILCIYINYD CDRQRQEFRR TNGKGTVWGK APSKIEATYT TTSGETKRSL LLTSGWWGLS RHFHYVPEIL AAFFWTVPAL FEHFLPYFYV IFLTILLFDR
401: AKRDDDRCRS KYGKYWKLYC DKVPYRIIPG IY
101: VYKANGLQAY FVTLITYFAL WWFGIFNPTI VYHHLGEIYS ALIFGSFLFC VFLYIKGHLA PSSTDSGSSG NLIIDFYWGM ELYPRIGKHF DIKVFTNCRF
201: GMMSWAVLAL TYCIKQYEEN GKVADSMLVN TALMLVYVTK FFWWEAGYWS TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVNLG IKLALSILVA
301: GILCIYINYD CDRQRQEFRR TNGKGTVWGK APSKIEATYT TTSGETKRSL LLTSGWWGLS RHFHYVPEIL AAFFWTVPAL FEHFLPYFYV IFLTILLFDR
401: AKRDDDRCRS KYGKYWKLYC DKVPYRIIPG IY
001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY
Arabidopsis Description
DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.