Factsheet for VIT_09s0054g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_06s0080g00970.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50430.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G50430.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT1G50430.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03603	Canola	plasma membrane	87.33	87.73
Bra014252.1-P	Field mustard	plasma membrane	87.1	87.5
CDY45061	Canola	plasma membrane	87.1	87.5
Bra030492.1-P	Field mustard	extracellular, plasma membrane	27.65	86.96
AT1G50430.1	Thale cress	plasma membrane	86.41	86.81
GSMUA_Achr6P30910_001	Banana	plasma membrane	86.41	86.41
KRH44662	Soybean	endoplasmic reticulum	85.48	85.88
PGSC0003DMT400038174	Potato	mitochondrion, plasma membrane	84.56	84.56
Solyc01g009310.2.1	Tomato	nucleus, plasma membrane	84.56	84.56
Solyc06g074090.2.1	Tomato	nucleus	81.8	81.8
PGSC0003DMT400015184	Potato	plasma membrane	81.8	81.8
Os02t0465400-01	Rice	plasma membrane	83.87	80.89
EES05015	Sorghum	plasma membrane	83.41	79.74
TraesCS3A01G488600.1	Wheat	plasma membrane	81.34	77.75
TraesCS3D01G484700.1	Wheat	golgi, peroxisome, plasma membrane	81.34	77.41
TraesCS3B01G536500.1	Wheat	plasma membrane	80.88	76.97
Zm00001d016463_P001	Maize	plastid	82.03	76.72
CDY29319	Canola	plasma membrane	67.97	70.91
Bra041028.1-P	Field mustard	plasma membrane	53.92	68.42
HORVU3Hr1G107040.11	Barley	plastid	82.03	66.67
CDY07287	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.89	56.94
CDY07286	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.18	42.39
VIT_08s0007g03930.t01	Wine grape	endoplasmic reticulum, plasma membrane	22.81	26.98

Protein Annotations

Gene3D:1.20.120.1630	EntrezGene:100256426	wikigene:100256426	MapMan:5.5.1.6	ProteinID:CCB45051	ProteinID:CCB45051.1
InterPro:Ergosterol_biosynth_ERG4_ERG24	UniProt:F6GYL5	EMBL:FN594972	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009918	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126
GO:GO:0016132	GO:GO:0016628	GO:GO:0030176	GO:GO:0055114	EntrezGene:LOC100256426	wikigene:LOC100256426
PFAM:PF01222	ScanProsite:PS01017	ScanProsite:PS01018	PANTHER:PTHR21257	PANTHER:PTHR21257:SF38	InterPro:Sterol_reductase_CS
TIGR:TC56258	TMHMM:TMhelix	UniParc:UPI000198404A	ArrayExpress:VIT_09s0054g00930	EnsemblPlantsGene:VIT_09s0054g00930	EnsemblPlants:VIT_09s0054g00930.t01
unigene:Vvi.620	RefSeq:XP_002268455	RefSeq:XP_002268455.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:21793355..21804681

Molecular Weight (calculated)

49811.8 Da

IEP (calculated)

8.624

GRAVY (calculated)

0.265

Length

434 amino acids

Sequence
(BLAST)

001: MAEAKTVHSP ALTYFSMISL LTLCPPFVIL LWYTMVHADG SVLQTWDYLK QHGVQGFIDI WPRPTAIAWK LIACYAAFEA ALQLFLPGKT VEGPISPCGN
101: RPVYKANGMQ AYAVTLITYL SLWWFGIFNP AIVYDHLGEI YSALIFGSLI FCIFLYIKGH VAPSSTDSGS SGNIIIDFYW GMELYPRIGK NFDIKVFTNC
201: RFGMMSWAVL AVTYCIKQYE ENGKVADSML VNTILMLVYV TKFFWWEAGY WNTMDIAHDR AGFYICWGCL VWVPSIYTSP GMYLVNHPVN LGTQLAIYIL
301: AAGITCIYIN YDCDRQRQEF RRTNGKCLVW GKAPSKIVAS YTTTSGETKS SLLLTSGWWG LSRHFHYVPE ILAAFFWTVP ALFGHFLPYF YVLFLTILLF
401: DRAKRDDDRC RSKYGKYWKK YCEKVRYRII PGIY

Best Arabidopsis Sequence Match ( AT1G50430.1 )
(BLAST)

001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY

Arabidopsis Description

DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.