Factsheet for Solyc01g009310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

plastid 1
cytosol 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 6
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50430.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT1G50430.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G50430.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G50430.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G50430.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038174	Potato	mitochondrion, plasma membrane	99.31	99.31
CDY03603	Canola	plasma membrane	84.33	84.72
VIT_09s0054g00930.t01	Wine grape	plasma membrane	84.56	84.56
Bra014252.1-P	Field mustard	plasma membrane	84.1	84.49
CDY45061	Canola	plasma membrane	84.1	84.49
Solyc06g074090.2.1	Tomato	nucleus	83.41	83.41
AT1G50430.1	Thale cress	plasma membrane	82.26	82.64
Bra030492.1-P	Field mustard	extracellular, plasma membrane	26.27	82.61
KRH44662	Soybean	endoplasmic reticulum	81.57	81.94
GSMUA_Achr6P30910_001	Banana	plasma membrane	80.65	80.65
Os02t0465400-01	Rice	plasma membrane	80.41	77.56
EES05015	Sorghum	plasma membrane	80.88	77.31
TraesCS3A01G488600.1	Wheat	plasma membrane	79.26	75.77
TraesCS3D01G484700.1	Wheat	golgi, peroxisome, plasma membrane	79.26	75.44
TraesCS3B01G536500.1	Wheat	plasma membrane	78.8	75.0
Zm00001d016463_P001	Maize	plastid	79.49	74.35
CDY29319	Canola	plasma membrane	65.21	68.03
HORVU3Hr1G107040.11	Barley	plastid	80.65	65.54
Bra041028.1-P	Field mustard	plasma membrane	51.61	65.5
CDY07287	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.43	55.56
CDY07286	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.88	39.16
Solyc09g009040.2.1	Tomato	plasma membrane	22.81	26.83

Protein Annotations

Gene3D:1.20.120.1630	MapMan:5.5.1.6	InterPro:Ergosterol_biosynth_ERG4_ERG24	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009918	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126
GO:GO:0016132	GO:GO:0016628	GO:GO:0030176	GO:GO:0055114	UniProt:K4ATC7	PFAM:PF01222
ScanProsite:PS01018	PANTHER:PTHR21257	PANTHER:PTHR21257:SF38	EnsemblPlantsGene:Solyc01g009310.2	EnsemblPlants:Solyc01g009310.2.1	InterPro:Sterol_reductase_CS
TMHMM:TMhelix	UniParc:UPI0002763524	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:3485878..3495206

Molecular Weight (calculated)

49674.0 Da

IEP (calculated)

8.851

GRAVY (calculated)

0.309

Length

434 amino acids

Sequence
(BLAST)

001: MVENKLVHSP LITYGSMLSL LSFTPPFVIL MWYTNVHADG SILKTFNHLR ENGLQGLIDI WPKPTAIAGK LIICYALFEA ALQLLLPGKT VEGPISPTGH
101: RPVYKANGMA AYAVTLITYI SLWWFGIFNP AIVYDHLGEI FSTLIFGSLV FCVLLYIKGH VAPSSTDSGS SGNIIVDFYW GMELYPRIGK HFDIKVFTNC
201: RFGMMSWAVL AVTYCIKQHE EYGRVSDSML VNTILMLVYV TKFFWWEAGY WNTMDIAHDR AGFYICWGCL VWVPSIYTSP GMYLVKQPVN LGLQLSLYIL
301: VAGLLCIYIN YDCDRQRQEF RRTNGKCTVW GKTPSKIVAA YTTTSGEKKT SLLLTSGWWG LARHFHYVPE ILAAFFWSVP ALFNHFIPYF YVIFLIILLL
401: DRAKRDDDRC KAKYGKYWKL YCEKVPYRVI PGIY

Best Arabidopsis Sequence Match ( AT1G50430.1 )
(BLAST)

001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY

Arabidopsis Description

DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.