CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX84933
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY03907
CDY09128
CDY15722
CDY27605
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50430.1	CDX84933	AT1G27300.1	21798944
AT1G50430.1	CDY03907	AT1G27300.1	21798944
AT1G50430.1	CDY15722	AT1G27300.1	21798944
AT1G50430.1	CDY27605	AT1G27300.1	21798944
AT1G50430.1	CDX78905	AT4G19030.1	21798944
AT1G50430.1	CDX98596	AT4G19030.1	21798944
AT1G50430.1	CDX99411	AT4G19030.1	21798944
AT1G50430.1	CDY01565	AT4G19030.1	21798944
AT1G50430.1	CDX70995	AT5G22290.1	21798944
AT1G50430.1	CDX88803	AT5G22290.1	21798944
AT1G50430.1	CDX92368	AT5G22290.1	21798944
AT1G50430.1	CDY09128	AT5G22290.1	21798944
AT1G50430.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014252.1-P	Field mustard	plasma membrane	99.77	99.77
CDY45061	Canola	plasma membrane	99.77	99.77
AT1G50430.1	Thale cress	plasma membrane	94.68	94.68
VIT_09s0054g00930.t01	Wine grape	plasma membrane	87.73	87.33
Solyc01g009310.2.1	Tomato	nucleus, plasma membrane	84.72	84.33
KRH44662	Soybean	endoplasmic reticulum	84.26	84.26
PGSC0003DMT400038174	Potato	mitochondrion, plasma membrane	84.49	84.1
GSMUA_Achr6P30910_001	Banana	plasma membrane	82.87	82.49
EES05015	Sorghum	plasma membrane	84.95	80.84
Os02t0465400-01	Rice	plasma membrane	83.56	80.22
Solyc06g074090.2.1	Tomato	nucleus	78.7	78.34
PGSC0003DMT400015184	Potato	plasma membrane	78.7	78.34
CDY29319	Canola	plasma membrane	75.0	77.88
Zm00001d016463_P001	Maize	plastid	82.64	76.94
TraesCS3D01G484700.1	Wheat	golgi, peroxisome, plasma membrane	80.32	76.1
TraesCS3A01G488600.1	Wheat	plasma membrane	79.86	75.99
TraesCS3B01G536500.1	Wheat	plasma membrane	79.4	75.22
CDY07287	Canola	endoplasmic reticulum, plasma membrane, vacuole	23.84	71.53
HORVU3Hr1G107040.11	Barley	plastid	80.79	65.36
CDY07286	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.56	42.72
CDX67552	Canola	endoplasmic reticulum, plasma membrane, vacuole	15.28	28.57
CDY70397	Canola	endoplasmic reticulum, plasma membrane	23.15	27.1
CDY13326	Canola	plasma membrane	14.35	26.84
CDX76247	Canola	plasma membrane	21.76	26.48
CDY66282	Canola	plasma membrane	22.45	26.36
CDX67551	Canola	endoplasmic reticulum, extracellular	8.33	24.66

Protein Annotations

Gene3D:1.20.120.1630	MapMan:5.5.1.6	GO:A0A078EVL1	EnsemblPlants:CDY03603	ProteinID:CDY03603	ProteinID:CDY03603.1
InterPro:Ergosterol_biosynth_ERG4_ERG24	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016628	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00116352001	PFAM:PF01222	ScanProsite:PS01017
ScanProsite:PS01018	PANTHER:PTHR21257	PANTHER:PTHR21257:SF38	InterPro:Sterol_reductase_CS	TMHMM:TMhelix	UniParc:UPI0004EAFFDB
SEG:seg	:	:	:	:	:

Description

BnaC03g68620D

Coordinates

chrLK031944:-:815457..818969

Molecular Weight (calculated)

49328.3 Da

IEP (calculated)

8.668

GRAVY (calculated)

0.337

Length

432 amino acids

Sequence
(BLAST)

001: MAATVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV VQTGSFLWEN GVQGLINIWP RPTAIAWKII FCYGAFEAAL QLLLPGKRVE GPISPTGNRP
101: VYKANGMAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSLVFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKNF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSIYTSPGM YLVNHPVQLG TQLAIYILVA
301: GCLCIYINYD CDRQRQEFRR TNGKCSVWGK APSKIVATYT TTAGETKTSL LLTSGWWGLA RHFHYVPEIS SAFFWTVPAL FNNFLPYFYV IFLTILLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY

Best Arabidopsis Sequence Match ( AT1G50430.1 )
(BLAST)

001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY

Arabidopsis Description

DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.