CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13326	Canola	plasma membrane	96.1	96.1
CDY70397	Canola	endoplasmic reticulum, plasma membrane	94.81	59.35
CDY66282	Canola	plasma membrane	93.07	58.42
CDX76247	Canola	plasma membrane	87.88	57.18
AT3G52940.1	Thale cress	plasma membrane	90.91	56.91
Os01t0354200-01	Rice	endoplasmic reticulum, plasma membrane	65.37	46.89
KRH20023	Soybean	endoplasmic reticulum, plasma membrane	74.46	45.99
PGSC0003DMT400007043	Potato	endoplasmic reticulum	71.43	44.72
Solyc09g009040.2.1	Tomato	plasma membrane	70.13	43.9
VIT_08s0007g03930.t01	Wine grape	endoplasmic reticulum, plasma membrane	68.83	43.32
KRH32646	Soybean	plasma membrane	46.75	42.19
GSMUA_Achr3P22830_001	Banana	plasma membrane	65.8	40.11
Os09t0565600-01	Rice	plasma membrane	63.64	39.84
EER96347	Sorghum	plasma membrane	63.2	39.46
TraesCS1D01G423500.1	Wheat	plasma membrane	62.34	38.3
TraesCS1A01G416000.1	Wheat	plasma membrane	60.61	37.63
TraesCS1B01G446300.1	Wheat	plasma membrane	61.9	37.05
HORVU1Hr1G091090.9	Barley	mitochondrion, peroxisome, plasma membrane, plastid	59.74	32.02
Zm00001d006889_P004	Maize	plastid	51.95	27.52
CDY45061	Canola	plasma membrane	28.57	15.28
CDY07287	Canola	endoplasmic reticulum, plasma membrane, vacuole	9.52	15.28
CDY03603	Canola	plasma membrane	28.57	15.28
CDY29319	Canola	plasma membrane	23.38	12.98
CDY07286	Canola	endoplasmic reticulum, plasma membrane, vacuole	10.82	8.09
CDX67551	Canola	endoplasmic reticulum, extracellular	1.73	2.74

Protein Annotations

MapMan:5.5.1.3	GO:A0A078BTP7	EnsemblPlants:CDX67552	ProteinID:CDX67552	ProteinID:CDX67552.1	InterPro:Ergosterol_biosynth_ERG4_ERG24
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016628	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00098685001	PFAM:PF01222	ScanProsite:PS01017
PANTHER:PTHR21257	PANTHER:PTHR21257:SF47	InterPro:Sterol_reductase_CS	TMHMM:TMhelix	UniParc:UPI0004EF18B4	SEG:seg

Description

BnaA07g15920D

Coordinates

chrLK031787:-:900133..901930

Molecular Weight (calculated)

25777.0 Da

IEP (calculated)

5.625

GRAVY (calculated)

0.800

Length

231 amino acids

Sequence
(BLAST)

001: MDLDVLLPSL IPSLQSVYVL VSYFAYLAVA GELLPGKVIR GVVLSDGSQL RYRCNGLFAL TLLVAILGIS AKLGIVSPLV VADRGLELLS ATFIFCVLVT
101: LVLYITGRSS SDKSSSLKPH VSGNLIHDWW FGIQLNPQFL SIDLKFFFVR AGMMGWLLIN LSILAKSVQD GSLSQSMILY QIFCALYILD YFVHEEYMTS
201: TWDIIAERLG FMLVFGDLLW IPFTFSIQAW N

Best Arabidopsis Sequence Match ( AT3G52940.2 )
(BLAST)

001: MLLDMDLGVL LPSLQSVYVL VFYFVYLAVA GEILPGKVIR GVLLSDGSQL RYRCNGLLAL ILLVAILGIC AKLGIVSPLV VADRGLELLS ATFIFCVLVT
101: LALYVTGRSS SNKGSSLKPH VSGNLVHDWW FGIQLNPQFM SIDLKFFFVR AGMMGWLLIN LSILAKSVQD GSLSQSMILY QIFCALYILD YFVHEEYMTS
201: TWDIIAERLG FMLVFGDLLW IPFTFSIQAW LVAFAQQSRT NSSCDCSQLP CLLDRVHGFS RS

Arabidopsis Description

FKDelta(14)-sterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDR4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.