Factsheet for PGSC0003DMT400085629

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47770.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G47770.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074910.1.1	Tomato	golgi, peroxisome, plasma membrane	92.12	94.44
VIT_07s0005g00140.t01	Wine grape	plastid	47.29	51.89
KRH68170	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	46.8	51.35
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	37.93	39.29
CDY53019	Canola	endoplasmic reticulum, nucleus, plasma membrane	34.98	39.01
Bra004430.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	33.0	37.64
CDY27471	Canola	golgi, peroxisome, plasma membrane	35.96	37.44
CDY55531	Canola	golgi, peroxisome, plasma membrane	35.96	37.24
CDX80134	Canola	endoplasmic reticulum, peroxisome, plasma membrane	32.51	37.08
Bra021442.1-P	Field mustard	golgi, peroxisome, plasma membrane	35.47	36.73
Os05t0151200-01	Rice	plastid	30.54	32.12
Zm00001d035803_P001	Maize	plastid	30.05	31.61
Zm00001d010856_P001	Maize	plastid	28.57	30.85
TraesCS1B01G121200.1	Wheat	cytosol	29.56	30.61
TraesCS1A01G093000.1	Wheat	plastid	29.06	30.1
TraesCS1D01G101700.1	Wheat	cytosol, plastid	29.06	30.1
HORVU1Hr1G021750.2	Barley	cytosol, plastid	28.57	29.15
EES17723	Sorghum	plastid	29.56	28.71
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	39.41	16.99

Protein Annotations

Gene3D:1.20.1260.100	EntrezGene:102598218	MapMan:19.3.4.1	EMBL:AJ786773	ProteinID:CAH10765	ProteinID:CAH10765.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005794	GO:GO:0005795	GO:GO:0006778	GO:GO:0006950	GO:GO:0006970
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	InterPro:IPR038330	UniProt:M1D9X7
PFAM:PF03073	EnsemblPlantsGene:PGSC0003DMG400035200	PGSC:PGSC0003DMG400035200	EnsemblPlants:PGSC0003DMT400085629	PIRSF:PIRSF005859	PANTHER:PTHR10057
PANTHER:PTHR10057:SF6	TMHMM:TMhelix	InterPro:TspO/MBR-related_sf	InterPro:TspO_MBR	UniParc:UPI0002969F46	RefSeq:XP_006359393.1
SEG:seg	:	:	:	:	:

Description

Peripheral-type benzodiazepine receptor [Source:PGSC_GENE;Acc:PGSC0003DMG400035200]

Coordinates

chr9:+:52426002..52426613

Molecular Weight (calculated)

22667.0 Da

IEP (calculated)

10.204

GRAVY (calculated)

0.176

Length

203 amino acids

Sequence
(BLAST)

001: MASQQDELKH RITTKSQQNE PQQTEQHTKS AHDNDSKTNK NINKSTRKQI AKRGLKSLTI ALTIPLLLTL IDISLFGSSY QYVSMEKPFW FPRLWALHLA
101: CLGSSLLMGL SAWLVWAEGG FHRQPMAILL YLSQLGLSLA WDPVVFKAGA TRIGLVLCMA LFGVLIACFR AFKNVNPIAG DLVKPCFGWA VLLSLANLKL
201: VYH

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.