CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol, plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47770.1	KRH11076	AT4G19030.1	21798944
AT2G47770.1	KRH21197	AT4G19030.1	21798944
AT2G47770.1	KRH42923	AT4G19030.1	21798944
AT2G47770.1	KRH42926	AT4G19030.1	21798944
AT2G47770.1	KRH45251	AT4G19030.1	21798944
AT2G47770.1	KRH59035	AT4G19030.1	21798944
AT2G47770.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g00140.t01	Wine grape	plastid	51.89	51.89
Solyc09g074910.1.1	Tomato	golgi, peroxisome, plasma membrane	51.89	48.48
PGSC0003DMT400085629	Potato	golgi, peroxisome, plasma membrane	51.35	46.8
KRH37113	Soybean	plasma membrane	39.46	43.71
KRH12050	Soybean	plasma membrane	38.38	42.52
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	43.24	40.82
CDY27471	Canola	golgi, peroxisome, plasma membrane	41.62	39.49
CDY55531	Canola	golgi, peroxisome, plasma membrane	41.62	39.29
CDY53019	Canola	endoplasmic reticulum, nucleus, plasma membrane	38.38	39.01
Bra021442.1-P	Field mustard	golgi, peroxisome, plasma membrane	41.08	38.78
Bra004430.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	36.76	38.2
CDX80134	Canola	endoplasmic reticulum, peroxisome, plasma membrane	35.68	37.08
Zm00001d035803_P001	Maize	plastid	33.51	32.12
Zm00001d010856_P001	Maize	plastid	31.89	31.38
EES17723	Sorghum	plastid	34.59	30.62
TraesCS1A01G093000.1	Wheat	plastid	31.35	29.59
TraesCS1B01G121200.1	Wheat	cytosol	31.35	29.59
TraesCS1D01G101700.1	Wheat	cytosol, plastid	31.35	29.59
Os05t0151200-01	Rice	plastid	30.81	29.53
HORVU1Hr1G021750.2	Barley	cytosol, plastid	29.73	27.64
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	44.86	17.62

Protein Annotations

Gene3D:1.20.1260.100	EntrezGene:100785785	MapMan:19.3.4.1	EMBL:ACUP02002102	EnsemblPlantsGene:GLYMA_03G213300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005794	GO:GO:0005795	GO:GO:0006778	GO:GO:0006950	GO:GO:0006970	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	UniProt:I1JQL0	InterPro:IPR038330	EnsemblPlants:KRH68170
ProteinID:KRH68170	ProteinID:KRH68170.1	PFAM:PF03073	PIRSF:PIRSF005859	PANTHER:PTHR10057	PANTHER:PTHR10057:SF0
TMHMM:TMhelix	InterPro:TspO/MBR-related_sf	InterPro:TspO_MBR	UniParc:UPI0002339A9B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:41861555..41863030

Molecular Weight (calculated)

20484.5 Da

IEP (calculated)

10.867

GRAVY (calculated)

0.582

Length

185 amino acids

Sequence
(BLAST)

001: MPSNDLKHRV TTTTATTNDV NRTSRGKRML MAKRGLKSLA IAVVLPLSLT ALSAYIGSSS SSAHYASRSP FWFPPSWALH LTCPASSFLM GLSAWMVWAD
101: GGFHRNPMAL LLYFTQLLFT VLWDPLVFAL GATRLGLILC VSLFLTQFGC MRLFRPFNPI AADLIKPCLA WVAFLSILNL KLLFV

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.