Factsheet for TraesCS1B01G121200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G093000.1	Wheat	plastid	97.45	97.45
TraesCS1D01G101700.1	Wheat	cytosol, plastid	96.94	96.94
HORVU1Hr1G021750.2	Barley	cytosol, plastid	91.33	89.95
Os05t0151200-01	Rice	plastid	65.82	66.84
Zm00001d010856_P001	Maize	plastid	55.1	57.45
Zm00001d035803_P001	Maize	plastid	53.06	53.89
EES17723	Sorghum	plastid	55.1	51.67
VIT_07s0005g00140.t01	Wine grape	plastid	31.63	33.51
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	33.16	33.16
KRH37113	Soybean	plasma membrane	27.04	31.74
KRH68170	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	29.59	31.35
CDY53019	Canola	endoplasmic reticulum, nucleus, plasma membrane	29.08	31.32
Bra004430.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	27.55	30.34
CDX80134	Canola	endoplasmic reticulum, peroxisome, plasma membrane	27.04	29.78
PGSC0003DMT400085629	Potato	golgi, peroxisome, plasma membrane	30.61	29.56
KRH12050	Soybean	plasma membrane	25.0	29.34
Solyc09g074910.1.1	Tomato	golgi, peroxisome, plasma membrane	29.59	29.29
VIT_05s0020g01510.t01	Wine grape	plasma membrane	25.0	29.17
CDY55531	Canola	golgi, peroxisome, plasma membrane	29.08	29.08
Bra021442.1-P	Field mustard	golgi, peroxisome, plasma membrane	29.08	29.08
CDY27471	Canola	golgi, peroxisome, plasma membrane	27.55	27.69
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	33.67	14.01

Protein Annotations

Gene3D:1.20.1260.100	MapMan:19.3.4.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0005795	GO:GO:0006778
GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
InterPro:IPR038330	PFAM:PF03073	PANTHER:PTHR10057	PANTHER:PTHR10057:SF0	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G121200
EnsemblPlants:TraesCS1B01G121200.1	InterPro:TspO/MBR-related_sf	InterPro:TspO_MBR	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:143058578..143059168

Molecular Weight (calculated)

19340.6 Da

IEP (calculated)

11.035

GRAVY (calculated)

0.444

Length

196 amino acids

Sequence
(BLAST)

001: METATATQDQ GLTRRAVGDV DATPARMPGS GARATSRDPK RKLGRAKRGL RSLAAAVTVS AALTAAAFYA SGAGSSSGTA KAPSSAMVAI ARAGSVAAEA
101: VMALAAWMVW AEGGLHGRPG ATLAPFAAQL LAAAAWPALA LRLGAGWAGM ACCAAMAAGA AACVRGFGGV NPVAGDLAKP CVAWAVLLAL MNYKML

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.