Factsheet for HORVU1Hr1G021750.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47770.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G093000.1	Wheat	plastid	91.46	92.86
TraesCS1B01G121200.1	Wheat	cytosol	89.95	91.33
TraesCS1D01G101700.1	Wheat	cytosol, plastid	88.94	90.31
Os05t0151200-01	Rice	plastid	63.32	65.28
Zm00001d010856_P001	Maize	plastid	52.76	55.85
Zm00001d035803_P001	Maize	plastid	51.26	52.85
EES17723	Sorghum	plastid	51.76	49.28
VIT_07s0005g00140.t01	Wine grape	plastid	31.16	33.51
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	31.16	31.63
CDY53019	Canola	endoplasmic reticulum, nucleus, plasma membrane	28.14	30.77
Bra004430.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	27.14	30.34
CDX80134	Canola	endoplasmic reticulum, peroxisome, plasma membrane	26.63	29.78
KRH68170	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	27.64	29.73
PGSC0003DMT400085629	Potato	golgi, peroxisome, plasma membrane	29.15	28.57
CDY55531	Canola	golgi, peroxisome, plasma membrane	28.14	28.57
Bra021442.1-P	Field mustard	golgi, peroxisome, plasma membrane	28.14	28.57
Solyc09g074910.1.1	Tomato	golgi, peroxisome, plasma membrane	28.14	28.28
KRH37113	Soybean	plasma membrane	23.62	28.14
CDY27471	Canola	golgi, peroxisome, plasma membrane	26.63	27.18
VIT_05s0020g01510.t01	Wine grape	plasma membrane	22.61	26.79
KRH12050	Soybean	plasma membrane	21.61	25.75
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	30.65	12.95

Protein Annotations

Gene3D:1.20.1260.100	MapMan:19.3.4.1	UniProt:A0A287EVH3	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0005795
GO:GO:0006778	GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0020037	EnsemblPlantsGene:HORVU1Hr1G021750	EnsemblPlants:HORVU1Hr1G021750.2	InterPro:IPR038330	PFAM:PF03073	PANTHER:PTHR10057
PANTHER:PTHR10057:SF0	TMHMM:TMhelix	InterPro:TspO/MBR-related_sf	InterPro:TspO_MBR	UniParc:UPI000B464E55	SEG:seg

Description

No Description!

Coordinates

chrchr1H:-:88953817..88959284

Molecular Weight (calculated)

18711.7 Da

IEP (calculated)

11.035

GRAVY (calculated)

0.359

Length

199 amino acids

Sequence
(BLAST)

001: PSSMETATAN QDQGLTRRAV GDVDAAPARM PASGARATSR DPKRKLGRAK RGLRSLAAAV TVSAALTAAA FYASGAGSSS GTAKAPSAAM VAIARAGSVA
101: AEAVMALAAW MVWAEGGLHR RPGATLAPFA AQLLAPAAXX XXXXXXXAGW AGMACCAAMA AGAGACVRGF GGVNPVAGDL AKPCVAWAVL LAVMNYKML

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.