Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- plasma membrane 2
- mitochondrion 1
- peroxisome 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47770.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT2G47770.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55531 | Canola | golgi, peroxisome, plasma membrane | 98.98 | 98.98 |
| AT2G47770.1 | Thale cress | golgi, peroxisome, vacuole | 82.14 | 82.14 |
| Bra004430.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 68.88 | 75.84 |
| VIT_07s0005g00140.t01 | Wine grape | plastid | 44.9 | 47.57 |
| KRH68170 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 38.78 | 41.08 |
| Solyc09g074910.1.1 | Tomato | golgi, peroxisome, plasma membrane | 38.27 | 37.88 |
| PGSC0003DMT400085629 | Potato | golgi, peroxisome, plasma membrane | 36.73 | 35.47 |
| Os05t0151200-01 | Rice | plastid | 30.1 | 30.57 |
| TraesCS1A01G093000.1 | Wheat | plastid | 29.08 | 29.08 |
| TraesCS1B01G121200.1 | Wheat | cytosol | 29.08 | 29.08 |
| TraesCS1D01G101700.1 | Wheat | cytosol, plastid | 28.57 | 28.57 |
| HORVU1Hr1G021750.2 | Barley | cytosol, plastid | 28.57 | 28.14 |
| EES17723 | Sorghum | plastid | 28.57 | 26.79 |
| Zm00001d035803_P001 | Maize | plastid | 26.02 | 26.42 |
| Zm00001d010856_P001 | Maize | plastid | 24.49 | 25.53 |
| GSMUA_Achr8P06680_001 | Banana | golgi, peroxisome, plasma membrane | 34.69 | 14.44 |
Protein Annotations
| EnsemblPlants:Bra021442.1 | EnsemblPlants:Bra021442.1-P | EnsemblPlantsGene:Bra021442 | Gene3D:1.20.1260.100 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR038330 | InterPro:TspO/MBR-related_sf | InterPro:TspO_MBR | PANTHER:PTHR10057 | PANTHER:PTHR10057:SF6 |
| PFAM:PF03073 | PIRSF:PIRSF005859 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002544AD9 | UniProt:M4DY46 |
| MapMan:19.3.4.1 | : | : | : | : | : |
Description
AT2G47770 (E=4e-088) | benzodiazepine receptor-related
Coordinates
chrA01:-:25200232..25200822
Molecular Weight (calculated)
21030.6 Da
IEP (calculated)
9.922
GRAVY (calculated)
0.186
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSQDIRHRG GDDRDAATTA MAETDRKQAD DNNKGQRDQK RAMAKRGLKS LTVAVAAPVL VMLFETYFLG GGGYGSRARS SSWIPPPWVL HATRLASRGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFTL CLLWGPVTFL VGSGVAGLVV WLGQSAALFG CYKAFNEISP VAGNLVKPCL ACAAFVTAVN VKLAIA
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFTL CLLWGPVTFL VGSGVAGLVV WLGQSAALFG CYKAFNEISP VAGNLVKPCL ACAAFVTAVN VKLAIA
001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
Arabidopsis Description
TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]
SUBAcon: [peroxisome,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.