Factsheet for Zm00001d010856_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035803_P001	Maize	plastid	73.94	72.02
EES17723	Sorghum	plastid	73.94	66.51
Os05t0151200-01	Rice	plastid	62.23	60.62
TraesCS1D01G101700.1	Wheat	cytosol, plastid	57.98	55.61
TraesCS1B01G121200.1	Wheat	cytosol	57.45	55.1
TraesCS1A01G093000.1	Wheat	plastid	57.45	55.1
HORVU1Hr1G021750.2	Barley	cytosol, plastid	55.85	52.76
VIT_07s0005g00140.t01	Wine grape	plastid	35.11	35.68
KRH68170	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	31.38	31.89
KRH37113	Soybean	plasma membrane	27.13	30.54
VIT_05s0020g01510.t01	Wine grape	plasma membrane	26.06	29.17
Solyc09g074910.1.1	Tomato	golgi, peroxisome, plasma membrane	30.32	28.79
PGSC0003DMT400085629	Potato	golgi, peroxisome, plasma membrane	30.85	28.57
Bra004430.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	25.0	26.4
KRH12050	Soybean	plasma membrane	23.4	26.35
CDX80134	Canola	endoplasmic reticulum, peroxisome, plasma membrane	24.47	25.84
CDY53019	Canola	endoplasmic reticulum, nucleus, plasma membrane	25.0	25.82
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	26.06	25.0
CDY27471	Canola	golgi, peroxisome, plasma membrane	25.53	24.62
CDY55531	Canola	golgi, peroxisome, plasma membrane	25.53	24.49
Bra021442.1-P	Field mustard	golgi, peroxisome, plasma membrane	25.53	24.49
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	35.11	14.01

Protein Annotations

Gene3D:1.20.1260.100	EntrezGene:100280949	MapMan:19.3.4.1	ProteinID:AQK95105.1	UniProt:B6SQ48	EMBL:EU954863
EMBL:EU976726	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR038330	PFAM:PF03073
ScanProsite:PS00369	PANTHER:PTHR10057	PANTHER:PTHR10057:SF0	InterPro:PTS_HPr_His_P_site	TMHMM:TMhelix	InterPro:TspO/MBR-related_sf
InterPro:TspO_MBR	UniParc:UPI000182B672	EnsemblPlantsGene:Zm00001d010856	EnsemblPlants:Zm00001d010856_P001	EnsemblPlants:Zm00001d010856_T001	SEG:seg

Description

Peripheral-type benzodiazepine receptor

Coordinates

chr8:-:130582741..130583307

Molecular Weight (calculated)

18377.4 Da

IEP (calculated)

11.637

GRAVY (calculated)

0.585

Length

188 amino acids

Sequence
(BLAST)

001: MATAAHEGVT QRVAASGSRD DGASGGIAAV SGPNKKPGGG RRRRGLRSVA AAVSIPAALV ALSFFAAGHS TPPPSSATVA VVRAGSVASE AVLALAAWMA
101: WAEGGLHARP AATLLPYAAR LGAALAWAPL VLGRHAAARA GLACCAAMAV GAVACARGFG AVNPVAGDLA KPAVAWAVIL AVVNYKML

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [golgi,peroxisome,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.