Factsheet for Zm00001d035803_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010856_P001	Maize	plastid	72.02	73.94
EES17723	Sorghum	plastid	70.98	65.55
Os05t0151200-01	Rice	plastid	60.62	60.62
TraesCS1D01G101700.1	Wheat	cytosol, plastid	55.96	55.1
TraesCS1A01G093000.1	Wheat	plastid	54.92	54.08
TraesCS1B01G121200.1	Wheat	cytosol	53.89	53.06
HORVU1Hr1G021750.2	Barley	cytosol, plastid	52.85	51.26
VIT_07s0005g00140.t01	Wine grape	plastid	33.16	34.59
KRH68170	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	32.12	33.51
VIT_05s0020g01510.t01	Wine grape	plasma membrane	27.98	32.14
KRH37113	Soybean	plasma membrane	26.42	30.54
Solyc09g074910.1.1	Tomato	golgi, peroxisome, plasma membrane	31.09	30.3
PGSC0003DMT400085629	Potato	golgi, peroxisome, plasma membrane	31.61	30.05
Bra004430.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	27.46	29.78
CDY53019	Canola	endoplasmic reticulum, nucleus, plasma membrane	27.98	29.67
CDX80134	Canola	endoplasmic reticulum, peroxisome, plasma membrane	26.94	29.21
KRH12050	Soybean	plasma membrane	24.35	28.14
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	27.98	27.55
CDY55531	Canola	golgi, peroxisome, plasma membrane	26.42	26.02
Bra021442.1-P	Field mustard	golgi, peroxisome, plasma membrane	26.42	26.02
CDY27471	Canola	golgi, peroxisome, plasma membrane	25.91	25.64
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	35.23	14.44

Protein Annotations

EnsemblPlants:Zm00001d035803_P001	EnsemblPlants:Zm00001d035803_T001	EnsemblPlantsGene:Zm00001d035803	EntrezGene:103629328	Gene3D:1.20.1260.100	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR038330	InterPro:PTS_HPr_His_P_site	InterPro:TspO/MBR-related_sf	InterPro:TspO_MBR
PANTHER:PTHR10057	PANTHER:PTHR10057:SF0	PFAM:PF03073	ProteinID:AQK79716.1	ScanProsite:PS00369	SEG:seg
TMHMM:TMhelix	UniParc:UPI000220CBBF	UniProt:A0A1D6LIV7	MapMan:19.3.4.1	:	:

Description

Translocator protein homolog

Coordinates

chr6:+:50839321..50839902

Molecular Weight (calculated)

18929.9 Da

IEP (calculated)

10.462

GRAVY (calculated)

0.586

Length

193 amino acids

Sequence
(BLAST)

001: MATAQEGLTQ RVVASASRDD GAGESAAAVS GPNKKPGGGR ANSSRRGLRS LAAAVSFSVA LTALSFFAAG QSPPSPKTAT ASTVAVVRAG SVALEAVLAL
101: AAWMAWAEGG LHARPAATLL PYAAHLGAAL AWAPLVLCSH AAARAGLACC AVMAAGAVAC ARGFGAVNPV AGDLAKPAVA WAVILAVVNY KML

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.