CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, plasma membrane
Any Predictor:	endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47770.1	CDX78905	AT4G19030.1	21798944
AT2G47770.1	CDX98596	AT4G19030.1	21798944
AT2G47770.1	CDX99411	AT4G19030.1	21798944
AT2G47770.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80134	Canola	endoplasmic reticulum, peroxisome, plasma membrane	84.62	86.52
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	80.22	74.49
CDY55531	Canola	golgi, peroxisome, plasma membrane	79.67	73.98
CDY27471	Canola	golgi, peroxisome, plasma membrane	79.12	73.85
VIT_07s0005g00140.t01	Wine grape	plastid	47.8	47.03
KRH68170	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	39.01	38.38
Solyc09g074910.1.1	Tomato	golgi, peroxisome, plasma membrane	40.11	36.87
PGSC0003DMT400085629	Potato	golgi, peroxisome, plasma membrane	39.01	34.98
Os05t0151200-01	Rice	plastid	32.97	31.09
TraesCS1A01G093000.1	Wheat	plastid	31.32	29.08
TraesCS1B01G121200.1	Wheat	cytosol	31.32	29.08
TraesCS1D01G101700.1	Wheat	cytosol, plastid	31.32	29.08
HORVU1Hr1G021750.2	Barley	cytosol, plastid	30.77	28.14
Zm00001d035803_P001	Maize	plastid	29.67	27.98
EES17723	Sorghum	plastid	29.12	25.36
Zm00001d010856_P001	Maize	plastid	25.82	25.0
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	37.36	14.44

Protein Annotations

EnsemblPlants:CDY53019	EnsemblPlantsGene:GSBRNA2T00008337001	Gene3D:1.20.1260.100	GO:A0A078IUC4	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR038330	InterPro:TspO/MBR-related_sf	InterPro:TspO_MBR	PANTHER:PTHR10057	PANTHER:PTHR10057:SF6
PFAM:PF03073	PIRSF:PIRSF005859	ProteinID:CDY53019	ProteinID:CDY53019.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE0E5B	UniProt:A0A078IUC4	MapMan:19.3.4.1	:	:	:

Description

BnaC04g00110DBnaC04g00110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUC4]

Coordinates

chrLK033154:+:41060..41608

Molecular Weight (calculated)

19453.0 Da

IEP (calculated)

10.426

GRAVY (calculated)

0.385

Length

182 amino acids

Sequence
(BLAST)

001: MDSQDIRSRA GDAAMAETER KHASDVNNKG KRDQKRAMAK RGLKSLTLAV AAPVLLTLFA SYFLGNRARS SSWILPLWVL HLMRLASSGL MGLAAWLVWV
101: DGGFHKKPNA LYLYLAQFVL SLTTCMVGSG LAGLAVCLGQ SAALFGCYKA FNETSPVAGN MVKPCLAFAA FVAAVNVKLA IA

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.