CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	endoplasmic reticulum, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47770.1	CDX78905	AT4G19030.1	21798944
AT2G47770.1	CDX98596	AT4G19030.1	21798944
AT2G47770.1	CDX99411	AT4G19030.1	21798944
AT2G47770.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004430.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	98.31	98.31
CDY53019	Canola	endoplasmic reticulum, nucleus, plasma membrane	86.52	84.62
CDY55531	Canola	golgi, peroxisome, plasma membrane	75.28	68.37
CDY27471	Canola	golgi, peroxisome, plasma membrane	74.72	68.21
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	74.72	67.86
VIT_07s0005g00140.t01	Wine grape	plastid	44.94	43.24
KRH68170	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	37.08	35.68
Solyc09g074910.1.1	Tomato	golgi, peroxisome, plasma membrane	37.64	33.84
PGSC0003DMT400085629	Potato	golgi, peroxisome, plasma membrane	37.08	32.51
Os05t0151200-01	Rice	plastid	30.9	28.5
TraesCS1D01G101700.1	Wheat	cytosol, plastid	30.34	27.55
TraesCS1A01G093000.1	Wheat	plastid	29.78	27.04
TraesCS1B01G121200.1	Wheat	cytosol	29.78	27.04
Zm00001d035803_P001	Maize	plastid	29.21	26.94
HORVU1Hr1G021750.2	Barley	cytosol, plastid	29.78	26.63
Zm00001d010856_P001	Maize	plastid	25.84	24.47
EES17723	Sorghum	plastid	28.65	24.4
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	33.71	12.74

Protein Annotations

EnsemblPlants:CDX80134	EnsemblPlantsGene:GSBRNA2T00133041001	Gene3D:1.20.1260.100	GO:A0A078CVU7	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR038330	InterPro:TspO/MBR-related_sf	InterPro:TspO_MBR	PANTHER:PTHR10057	PANTHER:PTHR10057:SF6
PFAM:PF03073	PIRSF:PIRSF005859	ProteinID:CDX80134	ProteinID:CDX80134.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE9EC1	MapMan:19.3.4.1	:	:	:	:

Description

BnaA05g00220D

Coordinates

chrLK031819:+:2049368..2049904

Molecular Weight (calculated)

19234.7 Da

IEP (calculated)

9.752

GRAVY (calculated)

0.305

Length

178 amino acids

Sequence
(BLAST)

001: MDSQDIRYRA GDAAMAETER KQADDNNNNK GKRDQKRAMA KRGLKSLTLA VAAPVLLTLF TSYFLGNQAR SSSWVLHLMR LASSGLMGLA AWLVWVDAGF
101: HKKPNALYLY LAQFVLCLTT CMVGSGLAGL AVCLCQSAAL FRCYKAFNET SPVAGNMVMP CLAFAAFVAA VNVKLAIA

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.