Factsheet for Zm00001d017239_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 23508561
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d010047_P001
Zm00001d017768_P006
Zm00001d020667_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d038964_P001
Zm00001d039272_P003
Zm00001d051562_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	Zm00001d017768_P006	AT3G50910.1	21798944
AT3G63130.1	Zm00001d020667_P001	AT3G50910.1	21798944
AT3G63130.1	Zm00001d038964_P001	AT3G50910.1	21798944
AT3G63130.1	Zm00001d051562_P001	AT3G50910.1	21798944
AT3G63130.1	Zm00001d003334_P001	AT4G26455.1	17600715
AT3G63130.1	Zm00001d005997_P002	AT4G26455.1	17600715
AT3G63130.1	Zm00001d020879_P001	AT4G26455.1	17600715
AT3G63130.1	Zm00001d025667_P001	AT4G26455.1	17600715
AT3G63130.1	Zm00001d003334_P001	AT4G26455.1	20579133
AT3G63130.1	Zm00001d005997_P002	AT4G26455.1	20579133
AT3G63130.1	Zm00001d020879_P001	AT4G26455.1	20579133
AT3G63130.1	Zm00001d025667_P001	AT4G26455.1	20579133
AT3G63130.1	Zm00001d010047_P001	AT5G11390.1	18591351
AT3G63130.1	Zm00001d039272_P003	AT5G11390.1	18591351
AT3G63130.1	Zm00001d003334_P001	AT5G56210.1	17600715
AT3G63130.1	Zm00001d005997_P002	AT5G56210.1	17600715
AT3G63130.1	Zm00001d020879_P001	AT5G56210.1	17600715
AT3G63130.1	Zm00001d025667_P001	AT5G56210.1	17600715
AT3G63130.1	Zm00001d003334_P001	AT5G56210.1	20579133
AT3G63130.1	Zm00001d005997_P002	AT5G56210.1	20579133
AT3G63130.1	Zm00001d020879_P001	AT5G56210.1	20579133
AT3G63130.1	Zm00001d025667_P001	AT5G56210.1	20579133
AT5G19320.1	Zm00001d003334_P001	AT4G26455.1	17600715
AT5G19320.1	Zm00001d005997_P002	AT4G26455.1	17600715
AT5G19320.1	Zm00001d020879_P001	AT4G26455.1	17600715
AT5G19320.1	Zm00001d025667_P001	AT4G26455.1	17600715
AT5G19320.1	Zm00001d010047_P001	AT5G11390.1	18591351
AT5G19320.1	Zm00001d039272_P003	AT5G11390.1	18591351
AT5G19320.1	Zm00001d003334_P001	AT5G56210.1	17600715
AT5G19320.1	Zm00001d005997_P002	AT5G56210.1	17600715
AT5G19320.1	Zm00001d020879_P001	AT5G56210.1	17600715
AT5G19320.1	Zm00001d025667_P001	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051112_P001	Maize	plasma membrane	87.95	89.15
EES07543	Sorghum	cytosol	40.73	84.86
Os05t0543200-01	Rice	plasma membrane	82.41	79.23
TraesCS1B01G266900.1	Wheat	plastid	80.5	76.41
TraesCS1D01G255600.1	Wheat	cytosol, plastid	80.31	75.68
TraesCS1A01G256200.1	Wheat	cytosol	79.54	75.64
TraesCS3D01G394300.1	Wheat	cytosol, plastid	78.78	74.37
TraesCS3B01G433100.1	Wheat	cytosol, plastid	78.39	74.01
HORVU3Hr1G090080.1	Barley	plastid	78.2	73.83
Zm00001d052426_P001	Maize	cytosol	18.55	70.8
TraesCS3A01G400100.1	Wheat	plastid	78.59	69.78
Zm00001d034691_P001	Maize	cytosol	49.14	67.63
HORVU1Hr1G063300.3	Barley	plastid	80.5	64.47
GSMUA_Achr11P...	Banana	cytosol, plastid	66.73	63.69
VIT_07s0104g00520.t01	Wine grape	plastid	64.24	62.11
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	63.48	61.6
KRH32020	Soybean	cytosol	62.72	61.42
Solyc09g065190.1.1	Tomato	plastid	62.33	61.05
KRH71426	Soybean	nucleus	62.14	60.98
PGSC0003DMT400086322	Potato	cytosol	62.14	60.86
KRG91256	Soybean	endoplasmic reticulum	61.57	60.53
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	60.23	59.89
KRH35557	Soybean	endoplasmic reticulum, nucleus	60.99	59.85
Os05t0409200-00	Rice	cytosol	12.05	58.88
Bra007730.1-P	Field mustard	cytosol, plastid	59.85	58.5
CDY56462	Canola	cytosol, plastid	59.85	58.5
AT3G63130.1	Thale cress	plastid	59.66	58.32
CDX93931	Canola	cytosol	37.67	58.28
AT5G19320.1	Thale cress	cytosol	59.66	57.25
Solyc01g079680.2.1	Tomato	plastid	59.66	56.73
CDX92540	Canola	cytosol	60.23	56.25
PGSC0003DMT400023310	Potato	plastid	59.46	56.24
Bra040432.1-P	Field mustard	plastid	57.36	55.97
CDY16082	Canola	cytosol	12.05	55.75
CDX89174	Canola	plastid	57.36	55.66
CDY02566	Canola	cytosol	20.65	54.55
CDX76683	Canola	mitochondrion	59.85	53.05
Bra026911.1-P	Field mustard	cytosol	13.0	51.52
Bra013834.1-P	Field mustard	cytosol	12.43	49.24
CDX93932	Canola	cytosol	9.94	45.22
GSMUA_Achr8P13660_001	Banana	cytosol	51.82	44.28
Bra020034.1-P	Field mustard	cytosol	20.27	43.09
CDY44911	Canola	cytosol	20.27	42.23
AT3G06000.1	Thale cress	cytosol	16.63	41.23
Zm00001d043604_P002	Maize	cytosol	42.06	40.97
Zm00001d046105_P001	Maize	peroxisome	43.4	38.61
Bra020788.1-P	Field mustard	cytosol, mitochondrion	16.63	36.86
CDY27720	Canola	cytosol, mitochondrion	17.02	36.63
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	12.05	32.98
Zm00001d044774_P004	Maize	plastid	17.59	14.18

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	UniProt:A0A1D6HD80	ProteinID:AQK72650.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248
SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI0008445647	InterPro:WPP_dom	InterPro:WPP_sf	EnsemblPlantsGene:Zm00001d017239
EnsemblPlants:Zm00001d017239_P001	EnsemblPlants:Zm00001d017239_T001	SEG:seg	:	:	:

Description

RAN GTPase-activating protein 2

Coordinates

chr5:+:190049317..190050888

Molecular Weight (calculated)

56834.4 Da

IEP (calculated)

4.334

GRAVY (calculated)

-0.298

Length

523 amino acids

Sequence
(BLAST)

001: MLVERMTKTM STESIFSRKY GLLGKQEAHE NAKRIEELCF ASADEHFKNE PDGDGSSAVQ LYAKESSKMM LEVLRKGPRT TAELEAPVDD TSLVSADAPR
101: VLADTVLDIS GGERAFIEAD EAKELLSPLT KPGNSYKRIC FSNRSFGIGA ANVAGPILES VKNQLTEVDI SDFVAGRPED EALDVMRIFS KALEGSVLRY
201: LNISDNALGE KGVRAFSELL KSQESLEELY VMNDGISEEA AKALSELIPA TEKLKVLHFH NNMTGDEGAM YIAEMVKRSP NVESFRCSAT RIGSDGGVAL
301: SEALGTCTRL KKLDLRDNLF GVDAGLALSK TLPKLPDLVE LYLSDLNLEN KGTIAIAKAL EQSAPQLEVL EIAGNEINAK AAPDLAKCLA AMQSLKKLTL
401: AENELKDDGA VIIAKSLEDG HIDLKELDVS VNMLQRVGAR CFARAVANKP AFELLNINGN FISGEGIDEV EEILKAGKKP LKVLGPLDEN EPDGEPDDDD
501: EEVEDNEDEL NSKLQSVKVE QDD

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.