Factsheet for VIT_14s0083g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02970.t01
VIT_14s0083g00730.t01
VIT_18s0001g09670.t01
VIT_19s0014g03800.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11390.1	VIT_19s0015g01790.t01	AT4G26455.1	18591351
AT5G11390.1	VIT_14s0083g00730.t01	AT5G11390.1	18591351
AT5G11390.1	VIT_05s0020g02970.t01	AT5G19320.1	18591351
AT5G11390.1	VIT_19s0014g03800.t01	AT5G19320.1	18591351
AT5G11390.1	VIT_18s0001g09670.t01	AT5G27940.1	18591351

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18315	Soybean	nucleus	39.64	50.81
KRG93747	Soybean	nucleus	38.66	50.18
KRH01441	Soybean	cytosol	44.82	49.23
PGSC0003DMT400068312	Potato	cytosol, golgi, nucleus	45.1	47.08
GSMUA_Achr1P19080_001	Banana	nucleus	39.64	47.01
AT5G11390.1	Thale cress	cytosol, golgi, nucleus	46.08	46.8
Solyc02g065660.2.1	Tomato	nucleus, plastid	39.36	44.89
CDX69762	Canola	nucleus	40.34	43.97
VIT_01s0010g00750.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	45.24	43.95
CDX97101	Canola	cytosol, golgi, nucleus	40.62	43.94
Bra008966.1-P	Field mustard	nucleus	40.34	43.9
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	39.36	42.32
Os05t0241000-01	Rice	nucleus	36.69	39.16
TraesCSU01G064900.1	Wheat	cytosol	37.11	38.86
TraesCS7D01G038700.1	Wheat	cytosol	36.55	38.38
KXG21620	Sorghum	cytosol	34.59	38.18
TraesCS7A01G042800.1	Wheat	cytosol	36.13	37.94
HORVU3Hr1G057330.1	Barley	cytosol	33.89	36.39
HORVU7Hr1G007940.7	Barley	mitochondrion	36.83	36.33
Zm00001d039272_P003	Maize	cytosol	32.77	35.83
TraesCS3A01G158400.1	Wheat	cytosol	33.33	35.36
TraesCS3D01G166100.1	Wheat	cytosol	32.35	35.32
OQU86053	Sorghum	cytosol, golgi, nucleus	32.91	35.29
Os01t0235350-00	Rice	cytosol	33.75	34.43
Zm00001d010047_P001	Maize	plastid	33.89	32.31

Protein Annotations

EntrezGene:100263487	wikigene:100263487	MapMan:20.4.2.2	EMBL:AM445665	ProteinID:CAN67491	ProteinID:CAN67491.1
ProteinID:CCB44074	ProteinID:CCB44074.1	ncoils:Coil	UniProt:F6GVT9	EMBL:FN594955	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0016020	GO:GO:0016021
EntrezGene:LOC100263487	wikigene:LOC100263487	PANTHER:PTHR35705	PANTHER:PTHR35705:SF1	SUPFAM:SSF57997	TMHMM:TMhelix
UniParc:UPI0002108C35	ArrayExpress:VIT_14s0083g00730	EnsemblPlantsGene:VIT_14s0083g00730	EnsemblPlants:VIT_14s0083g00730.t01	unigene:Vvi.9455	RefSeq:XP_002278644
RefSeq:XP_002278644.1	RefSeq:XP_010660542.1	RefSeq:XP_010660543.1	RefSeq:XP_010660544.1	RefSeq:XP_010660545.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:22866088..22869527

Molecular Weight (calculated)

80927.8 Da

IEP (calculated)

4.391

GRAVY (calculated)

-0.484

Length

714 amino acids

Sequence
(BLAST)

001: MDAETVLDAT ASVDDINTSD PEAEENNMDL HEGISSYGEV MLEVGNATEV LKRVELDLAC SSEKLFNLSI LTMHVATRES DFEAFASEEE HVLDDSVQKA
101: LEFDLLSGIL DSEVREVDNF MTTLQKDVAH THEILSSCEN LGGAFMEMEE KLHDSDVLLK QSQDHVSEIR MQSAKFQRTL LCFDGEGKWN NDKGMDLLEN
201: SEFSNMNTKI KMQTAEQQRD ILRMLEKSLA RELDVEKKLA ESRQLEEELK LRLHSLEQEV FFMEEEEAIV WERLFEAENA AEVLKGISKE LRGRLQIFQF
301: NLNGSMKREG ELKSKLQGST KEVEDKEDAL LKLESSSAEL HDFLIQQTNN LKASLREAED KLILSNSEAF TLREKVSSLE NQLKESEFQL MNAKASVDGN
401: QEQHPLYSQL SEMKNVVINL KERISKAESR AESAEAKCKL LMETNMELSD ELVLLRSDNT TEKVNSLEKQ LRESDIQLQH ALASAEASLE KQSMLYSTIE
501: DMENLIEDLK LKVSKAESRA DCTEEKCIIL SESNAELSEE LSFLRTRMEC LETSLHQAEE TKVETAKDIS VRTKVITNLV MQLAFERERL HKQVSLLTDK
601: NKVLVGKLKK TEDPSIASKV TRGEFCPKDD LTTATCAKEC IVEQTEFSAS SFEMEEAPKN LSVGGIIAGP SDSVSEPETV RRLDPGQLSF KYIFMAVFIL
701: LTAAYLFQQQ NRQF

Best Arabidopsis Sequence Match ( AT5G11390.1 )
(BLAST)

001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM

Arabidopsis Description

WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.