CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH17367
KRH69472
KRH73005
KRH74682

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44590.1	KRH69472	AT1G10510.1	21798944
AT3G44590.1	KRH74682	AT1G10510.1	21798944
AT3G44590.1	KRH17367	AT3G02885.1	21798944
AT3G44590.1	KRH73005	AT3G02885.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26594	Soybean	endoplasmic reticulum	69.8	93.69
KRH32679	Soybean	endoplasmic reticulum	55.03	71.93
KRH30835	Soybean	endoplasmic reticulum	53.69	70.18
KRH67884	Soybean	endoplasmic reticulum	52.35	69.03
Bra000501.1-P	Field mustard	extracellular	52.35	68.42
AT3G44590.1	Thale cress	extracellular	50.34	67.57
CDX83277	Canola	extracellular	51.68	67.54
CDY31188	Canola	extracellular	51.68	67.54
KRG96175	Soybean	extracellular	51.01	67.26
AT2G27710.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.68	66.96
TraesCS1D01G276700.1	Wheat	extracellular	48.99	65.18
CDY30535	Canola	extracellular	48.99	64.6
CDY04508	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.99	64.6
Bra034363.1-P	Field mustard	extracellular	48.99	64.6
TraesCS1B01G286500.1	Wheat	extracellular	48.32	64.29
CDX71430	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.99	64.04
CDX77131	Canola	extracellular	48.32	63.72
Bra012004.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.32	63.72
TraesCS1A01G277500.1	Wheat	nucleus	47.65	62.83
HORVU1Hr1G073640.1	Barley	cytosol	46.98	61.95
AT2G27720.2	Thale cress	extracellular	51.01	58.46
Os05t0445500-01	Rice	nucleus	48.32	51.8
KXG22113	Sorghum	endoplasmic reticulum, extracellular, plastid	48.32	49.66
Zm00001d010128_P003	Maize	cytosol	43.62	39.39

Protein Annotations

Gene3D:1.10.10.1410	EntrezGene:100791682	MapMan:17.1.2.1.47	EMBL:ACUP02008427	EnsemblPlantsGene:GLYMA_13G318200	GO:GO:0002181
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR038716	UniProt:K7M324	EnsemblPlants:KRH22710	ProteinID:KRH22710	ProteinID:KRH22710.1	HAMAP:MF_01478
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF72	InterPro:Ribosomal_L12	UniParc:UPI0002951BF9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:41265115..41266746

Molecular Weight (calculated)

15303.1 Da

IEP (calculated)

4.693

GRAVY (calculated)

-0.145

Length

149 amino acids

Sequence
(BLAST)

001: MRLHSSPLLC LSSPFAQTLT PKSQKKRNRN RNLADMKVVA AYLLAVLGGN PSPSADDIKN ILGAVGAEAE HELIELLLTE VKGKDFNELL ASGSEKISAV
101: AGGGAAVAVA AAPAGGAGGG AAPAAEAKEE KKVEEKEESD DDMGFSLFD

Best Arabidopsis Sequence Match ( AT3G44590.1 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.