Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034363.1-P | Field mustard | extracellular | 99.11 | 99.11 |
| CDY30535 | Canola | extracellular | 99.11 | 99.11 |
| CDX83277 | Canola | extracellular | 91.15 | 90.35 |
| CDY31188 | Canola | extracellular | 91.15 | 90.35 |
| CDX71430 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 87.61 | 86.84 |
| AT2G27710.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 87.61 | 86.09 |
| CDY04508 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 84.07 | 84.07 |
| AT2G27720.2 | Thale cress | extracellular | 86.73 | 75.38 |
| KRH26594 | Soybean | endoplasmic reticulum | 61.95 | 63.06 |
| HORVU1Hr1G073640.1 | Barley | cytosol | 54.87 | 54.87 |
| TraesCS1A01G277500.1 | Wheat | nucleus | 54.87 | 54.87 |
| TraesCS1D01G276700.1 | Wheat | extracellular | 53.98 | 54.46 |
| TraesCS1B01G286500.1 | Wheat | extracellular | 53.1 | 53.57 |
| CDY04023 | Canola | cytosol | 53.1 | 53.1 |
| CDY47246 | Canola | extracellular | 52.21 | 51.75 |
| CDX86428 | Canola | cytosol | 50.44 | 50.44 |
| CDX85202 | Canola | extracellular | 50.44 | 50.44 |
| CDY00130 | Canola | cytosol | 49.56 | 49.56 |
| KRH22710 | Soybean | endoplasmic reticulum | 63.72 | 48.32 |
| Os05t0445500-01 | Rice | nucleus | 59.29 | 48.2 |
| KXG22113 | Sorghum | endoplasmic reticulum, extracellular, plastid | 55.75 | 43.45 |
| Zm00001d010128_P003 | Maize | cytosol | 52.21 | 35.76 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | GO:A0A078CIY2 | EnsemblPlants:CDX77131 | ProteinID:CDX77131 | ProteinID:CDX77131.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00127736001 | InterPro:IPR038716 | HAMAP:MF_01478 |
| InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF72 | InterPro:Ribosomal_L12 | SignalP:SignalP-noTM |
| UniParc:UPI0002A9FCA6 | SEG:seg | : | : | : | : |
Description
BnaC04g39260D
Coordinates
chrLK031809:+:1343355..1344393
Molecular Weight (calculated)
11497.6 Da
IEP (calculated)
4.178
GRAVY (calculated)
-0.077
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVAAFLLA VLSGKACPTS ADIKVILNSV GCETEDSQIE LLLKEVNGKD VAELIAVGRE KLASVPSGGG GVAMASAPSA GGGGGAAPAE DKKEEKKEEK
101: EESDDDMGFS LFE
101: EESDDDMGFS LFE
001: MKVVAAFLLA VLSGKASPTT GDIKDILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG GGVAVASATS GGGGGGGAPA AESKKEEKKE
101: EKEESDDDMG FSLFE
101: EKEESDDDMG FSLFE
Arabidopsis Description
60S acidic ribosomal protein family [Source:UniProtKB/TrEMBL;Acc:F4IGR4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.