Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G27710.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 83.85 | 94.78 |
| Bra000501.1-P | Field mustard | extracellular | 78.46 | 89.47 |
| CDX83277 | Canola | extracellular | 77.69 | 88.6 |
| CDY31188 | Canola | extracellular | 77.69 | 88.6 |
| Bra034363.1-P | Field mustard | extracellular | 75.38 | 86.73 |
| CDX77131 | Canola | extracellular | 75.38 | 86.73 |
| CDY30535 | Canola | extracellular | 75.38 | 86.73 |
| CDX71430 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 74.62 | 85.09 |
| CDY04508 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 73.85 | 84.96 |
| Bra012004.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 73.08 | 84.07 |
| AT3G44590.1 | Thale cress | extracellular | 61.54 | 72.07 |
| KRH26594 | Soybean | endoplasmic reticulum | 56.92 | 66.67 |
| HORVU1Hr1G073640.1 | Barley | cytosol | 51.54 | 59.29 |
| TraesCS1A01G277500.1 | Wheat | nucleus | 49.23 | 56.64 |
| TraesCS1D01G276700.1 | Wheat | extracellular | 48.46 | 56.25 |
| TraesCS1B01G286500.1 | Wheat | extracellular | 47.69 | 55.36 |
| AT5G40040.1 | Thale cress | cytosol | 48.46 | 55.26 |
| AT3G28500.1 | Thale cress | cytosol | 46.15 | 52.17 |
| KRH22710 | Soybean | endoplasmic reticulum | 58.46 | 51.01 |
| Os05t0445500-01 | Rice | nucleus | 52.31 | 48.92 |
| KXG22113 | Sorghum | endoplasmic reticulum, extracellular, plastid | 48.46 | 43.45 |
| Zm00001d010128_P003 | Maize | cytosol | 46.15 | 36.36 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | EntrezGene:817318 | ProteinID:AEC08034.1 | ArrayExpress:AT2G27720 | EnsemblPlantsGene:AT2G27720 |
| RefSeq:AT2G27720 | TAIR:AT2G27720 | RefSeq:AT2G27720-TAIR-G | EnsemblPlants:AT2G27720.2 | TAIR:AT2G27720.2 | ncoils:Coil |
| UniProt:F4IGR4 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0006414 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022626 | GO:GO:0030529 |
| GO:GO:0042788 | InterPro:IPR038716 | HAMAP:MF_01478 | RefSeq:NP_001154535.1 | InterPro:P1/P2_N_sf | PFAM:PF00428 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006339 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF72 |
| InterPro:Ribosomal_L12 | SignalP:SignalP-noTM | UniParc:UPI0001A7B2D7 | SEG:seg | : | : |
Description
60S acidic ribosomal protein family [Source:UniProtKB/TrEMBL;Acc:F4IGR4]
Coordinates
chr2:+:11818696..11819578
Molecular Weight (calculated)
13031.5 Da
IEP (calculated)
4.154
GRAVY (calculated)
0.088
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVAAFLLA VLSGKASPTT GDIKDILGSG IMVLVLDCVV IGDCFGAETE DSQIELLLKE VKGKDLAELI AAGREKLASV PSGGGGGVAV ASATSGGGGG
101: GGAPAAESKK EEKKEEKEES DDDMGFSLFE
101: GGAPAAESKK EEKKEEKEES DDDMGFSLFE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.