Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025339.1-P | Field mustard | cytosol | 70.43 | 71.68 |
| CDX86428 | Canola | cytosol | 70.43 | 71.68 |
| CDY00130 | Canola | cytosol | 68.7 | 69.91 |
| CDY47246 | Canola | extracellular | 68.7 | 69.3 |
| CDY04023 | Canola | cytosol | 67.83 | 69.03 |
| CDX85202 | Canola | extracellular | 67.83 | 69.03 |
| Bra033049.1-P | Field mustard | cytosol | 67.83 | 68.42 |
| AT5G40040.1 | Thale cress | cytosol | 66.96 | 67.54 |
| Bra039054.1-P | Field mustard | cytosol | 66.09 | 67.26 |
| Solyc11g067100.1.1 | Tomato | nucleus | 60.87 | 61.95 |
| VIT_13s0074g00750.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 58.26 | 58.26 |
| PGSC0003DMT400029096 | Potato | cytosol | 56.52 | 58.04 |
| VIT_08s0007g03620.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 57.39 | 57.89 |
| PGSC0003DMT400019150 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 58.26 | 57.76 |
| PGSC0003DMT400030564 | Potato | extracellular | 55.65 | 57.66 |
| KRH32679 | Soybean | endoplasmic reticulum | 55.65 | 56.14 |
| VIT_10s0042g01190.t01 | Wine grape | extracellular | 53.04 | 53.98 |
| AT2G27710.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 53.91 | 53.91 |
| KRH30835 | Soybean | endoplasmic reticulum | 53.04 | 53.51 |
| EES13065 | Sorghum | extracellular | 51.3 | 52.68 |
| GSMUA_Achr10P... | Banana | plasma membrane | 53.04 | 52.59 |
| TraesCS2D01G291600.1 | Wheat | unclear | 51.3 | 52.21 |
| TraesCS2B01G310300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.3 | 52.21 |
| TraesCS2A01G294000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.3 | 52.21 |
| GSMUA_Achr6P07520_001 | Banana | cytosol | 41.74 | 51.06 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 49.57 | 50.89 |
| Os01t0191100-01 | Rice | extracellular | 50.43 | 50.88 |
| Zm00001d026578_P002 | Maize | plastid | 48.7 | 50.45 |
| Zm00001d001899_P001 | Maize | plasma membrane | 48.7 | 49.56 |
| AT3G44590.1 | Thale cress | extracellular | 47.83 | 49.55 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 50.43 | 48.33 |
| Solyc07g007880.1.1 | Tomato | cytosol | 46.96 | 48.21 |
| VIT_06s0061g01600.t01 | Wine grape | cytosol | 60.0 | 47.59 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 49.57 | 47.5 |
| PGSC0003DMT400085198 | Potato | cytosol, plastid | 48.7 | 47.46 |
| AT2G27720.2 | Thale cress | extracellular | 52.17 | 46.15 |
| Solyc06g074430.2.1 | Tomato | nucleus, unclear | 60.87 | 45.16 |
| VIT_18s0076g00370.t01 | Wine grape | cytosol | 38.26 | 44.44 |
| HORVU0Hr1G004480.1 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 32.17 | 32.46 |
| Zm00001d009652_P003 | Maize | mitochondrion | 47.83 | 21.74 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 50.43 | 20.64 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | EntrezGene:822480 | ProteinID:AEE77453.1 | ArrayExpress:AT3G28500 | EnsemblPlantsGene:AT3G28500 |
| RefSeq:AT3G28500 | TAIR:AT3G28500 | RefSeq:AT3G28500-TAIR-G | EnsemblPlants:AT3G28500.1 | TAIR:AT3G28500.1 | EMBL:AY086773 |
| ProteinID:BAB01952.1 | EMBL:BT003971 | EMBL:BT005087 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0022626 |
| GO:GO:0030529 | GO:GO:0042788 | InterPro:IPR038716 | HAMAP:MF_01478 | RefSeq:NP_189491.1 | InterPro:P1/P2_N_sf |
| PFAM:PF00428 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF75 | UniProt:Q9LH85 |
| InterPro:Ribosomal_L12 | UniParc:UPI000000C210 | SEG:seg | : | : | : |
Description
RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
Coordinates
chr3:+:10682029..10682979
Molecular Weight (calculated)
11736.0 Da
IEP (calculated)
4.298
GRAVY (calculated)
-0.022
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD
101: KDESSDDAGM MGLFD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.