Factsheet for VIT_08s0007g03620.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
cytosol 3
plastid 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g067100.1.1	Tomato	nucleus	82.46	83.19
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.58	80.17
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.7	80.0
KRH32679	Soybean	endoplasmic reticulum	79.82	79.82
PGSC0003DMT400030564	Potato	extracellular	76.32	78.38
KRH30835	Soybean	endoplasmic reticulum	77.19	77.19
VIT_10s0042g01190.t01	Wine grape	extracellular	71.93	72.57
VIT_06s0061g01600.t01	Wine grape	cytosol	89.47	70.34
EES13065	Sorghum	extracellular	67.54	68.75
Zm00001d001899_P001	Maize	plasma membrane	65.79	66.37
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.91	66.07
Zm00001d026578_P002	Maize	plastid	64.04	65.77
GSMUA_Achr10P...	Banana	plasma membrane	66.67	65.52
PGSC0003DMT400029096	Potato	cytosol	64.04	65.18
VIT_18s0076g00370.t01	Wine grape	cytosol	56.14	64.65
OQU78483	Sorghum	endoplasmic reticulum, extracellular	67.54	64.17
Os01t0191100-01	Rice	extracellular	64.04	64.04
GSMUA_Achr6P07520_001	Banana	cytosol	52.63	63.83
TraesCS2D01G291600.1	Wheat	unclear	63.16	63.72
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.16	63.72
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.16	63.72
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.91	61.67
AT5G40040.1	Thale cress	cytosol	59.65	59.65
CDY04023	Canola	cytosol	57.89	58.41
Solyc06g074430.2.1	Tomato	nucleus, unclear	78.95	58.06
AT3G28500.1	Thale cress	cytosol	57.89	57.39
Solyc07g007880.1.1	Tomato	cytosol	56.14	57.14
CDX85202	Canola	extracellular	56.14	56.64
Bra025339.1-P	Field mustard	cytosol	56.14	56.64
CDX86428	Canola	cytosol	56.14	56.64
CDY00130	Canola	cytosol	56.14	56.64
Bra039054.1-P	Field mustard	cytosol	55.26	55.75
CDY47246	Canola	extracellular	53.51	53.51
PGSC0003DMT400085198	Potato	cytosol, plastid	55.26	53.39
Bra033049.1-P	Field mustard	cytosol	52.63	52.63
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.84	36.84
Zm00001d009652_P003	Maize	mitochondrion	64.91	29.25
Zm00001d009657_P001	Maize	cytosol, mitochondrion	67.54	27.4

Protein Annotations

Gene3D:1.10.10.1410	EntrezGene:100254522	wikigene:100254522	MapMan:17.1.2.1.47	ProteinID:CBI30271	ProteinID:CBI30271.3
UniProt:D7TJ45	EMBL:FN595991	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR038716	EntrezGene:LOC100254522	wikigene:LOC100254522
HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF75	InterPro:Ribosomal_L12
TIGR:TC58691	UniParc:UPI00015CA1CB	ArrayExpress:VIT_08s0007g03620	EnsemblPlantsGene:VIT_08s0007g03620	EnsemblPlants:VIT_08s0007g03620.t01	RefSeq:XP_002283025
RefSeq:XP_002283025.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:17565341..17567618

Molecular Weight (calculated)

11504.5 Da

IEP (calculated)

4.031

GRAVY (calculated)

-0.087

Length

114 amino acids

Sequence
(BLAST)

001: MKVIAAYLLA VLGGNTCPSA NDLKDILGSV GAEADDDRIE LLLSEVKGKD ITELIASGRE KLASVPSGGG VAVAATAVGG ASGGGAPAAP EPKKEEKVEE
101: KEESDDDMGF SLFD

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.