CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025339.1-P	Field mustard	cytosol	96.46	96.46
CDX86428	Canola	cytosol	96.46	96.46
CDY04023	Canola	cytosol	89.38	89.38
CDY00130	Canola	cytosol	86.73	86.73
CDY47246	Canola	extracellular	75.22	74.56
AT3G28500.1	Thale cress	cytosol	69.03	67.83
PGSC0003DMT400030564	Potato	extracellular	55.75	56.76
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.64	56.14
Solyc11g067100.1.1	Tomato	nucleus	55.75	55.75
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.75	54.78
KRH30835	Soybean	endoplasmic reticulum	54.87	54.39
KRH32679	Soybean	endoplasmic reticulum	53.98	53.51
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.87	53.45
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.21	52.21
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.21	52.21
TraesCS2D01G291600.1	Wheat	unclear	52.21	52.21
CDY30535	Canola	extracellular	50.44	50.44
CDX77131	Canola	extracellular	50.44	50.44
CDY31188	Canola	extracellular	50.44	50.0
PGSC0003DMT400029096	Potato	cytosol	49.56	50.0
GSMUA_Achr6P07520_001	Banana	cytosol	41.59	50.0
CDX83277	Canola	extracellular	49.56	49.12
EES13065	Sorghum	extracellular	48.67	49.11
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.67	49.11
VIT_10s0042g01190.t01	Wine grape	extracellular	48.67	48.67
Zm00001d001899_P001	Maize	plasma membrane	48.67	48.67
CDY04508	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.67	48.67
Zm00001d026578_P002	Maize	plastid	47.79	48.65
GSMUA_Achr10P...	Banana	plasma membrane	48.67	47.41
Os01t0191100-01	Rice	extracellular	46.9	46.49
CDX71430	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.9	46.49
OQU78483	Sorghum	endoplasmic reticulum, extracellular	48.67	45.83
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.79	45.0
VIT_06s0061g01600.t01	Wine grape	cytosol	56.64	44.14
VIT_18s0076g00370.t01	Wine grape	cytosol	38.05	43.43
Solyc07g007880.1.1	Tomato	cytosol	41.59	41.96
Solyc06g074430.2.1	Tomato	nucleus, unclear	54.87	40.0
PGSC0003DMT400085198	Potato	cytosol, plastid	40.71	38.98
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.2	28.95
Zm00001d009652_P003	Maize	mitochondrion	46.9	20.95
Zm00001d009657_P001	Maize	cytosol, mitochondrion	49.56	19.93

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:A0A078D7X9	EnsemblPlants:CDX85202	ProteinID:CDX85202	ProteinID:CDX85202.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00142819001	InterPro:IPR038716	HAMAP:MF_01478
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF75	InterPro:Ribosomal_L12	UniParc:UPI0004EC3409
SEG:seg	:	:	:	:	:

Description

BnaC07g25130D

Coordinates

chrLK031841:+:226434..226775

Molecular Weight (calculated)

11742.7 Da

IEP (calculated)

4.028

GRAVY (calculated)

-0.250

Length

113 amino acids

Sequence
(BLAST)

001: MKVIAAFLLA KLAGDENPNK GDLKNIFDSV GAEFDETKTD LFFSLVKDHD VTELIAAGRE KMGALSSGGG AVAMVAGAGG DAPSAAEPAT ESKKVEEEKE
101: ESDDGEGMMS LFD

Best Arabidopsis Sequence Match ( AT3G28500.1 )
(BLAST)

001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD

Arabidopsis Description

RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.