Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
21334471
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P07520_001 | Banana | cytosol | 61.21 | 75.53 |
| EES13065 | Sorghum | extracellular | 72.41 | 75.0 |
| Zm00001d001899_P001 | Maize | plasma membrane | 70.69 | 72.57 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 68.97 | 71.43 |
| GSMUA_Achr3P31180_001 | Banana | plasma membrane | 68.97 | 71.43 |
| Zm00001d026578_P002 | Maize | plastid | 68.1 | 71.17 |
| GSMUA_Achr7P25500_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 69.83 | 70.43 |
| TraesCS2D01G291600.1 | Wheat | unclear | 68.1 | 69.91 |
| TraesCS2B01G310300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 68.1 | 69.91 |
| TraesCS2A01G294000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 68.1 | 69.91 |
| Solyc11g067100.1.1 | Tomato | nucleus | 68.1 | 69.91 |
| GSMUA_Achr4P02910_001 | Banana | cytosol | 68.1 | 69.3 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 70.69 | 68.33 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 70.69 | 68.33 |
| Os01t0191100-01 | Rice | extracellular | 66.38 | 67.54 |
| PGSC0003DMT400019150 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 67.24 | 67.24 |
| VIT_08s0007g03620.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.52 | 66.67 |
| PGSC0003DMT400030564 | Potato | extracellular | 63.79 | 66.67 |
| VIT_13s0074g00750.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.52 | 66.09 |
| KRH32679 | Soybean | endoplasmic reticulum | 62.93 | 64.04 |
| PGSC0003DMT400029096 | Potato | cytosol | 61.21 | 63.39 |
| KRH30835 | Soybean | endoplasmic reticulum | 62.07 | 63.16 |
| VIT_10s0042g01190.t01 | Wine grape | extracellular | 60.34 | 61.95 |
| VIT_06s0061g01600.t01 | Wine grape | cytosol | 69.83 | 55.86 |
| CDY00130 | Canola | cytosol | 51.72 | 53.1 |
| Bra039054.1-P | Field mustard | cytosol | 51.72 | 53.1 |
| AT3G28500.1 | Thale cress | cytosol | 52.59 | 53.04 |
| VIT_18s0076g00370.t01 | Wine grape | cytosol | 44.83 | 52.53 |
| AT5G40040.1 | Thale cress | cytosol | 50.86 | 51.75 |
| Solyc06g074430.2.1 | Tomato | nucleus, unclear | 68.1 | 50.97 |
| Bra025339.1-P | Field mustard | cytosol | 49.14 | 50.44 |
| CDX86428 | Canola | cytosol | 49.14 | 50.44 |
| CDX85202 | Canola | extracellular | 47.41 | 48.67 |
| CDY04023 | Canola | cytosol | 47.41 | 48.67 |
| PGSC0003DMT400085198 | Potato | cytosol, plastid | 49.14 | 48.31 |
| Solyc07g007880.1.1 | Tomato | cytosol | 46.55 | 48.21 |
| CDY47246 | Canola | extracellular | 46.55 | 47.37 |
| Bra033049.1-P | Field mustard | cytosol | 46.55 | 47.37 |
| HORVU0Hr1G004480.1 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 34.48 | 35.09 |
| Zm00001d009652_P003 | Maize | mitochondrion | 65.52 | 30.04 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 71.55 | 29.54 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 |
| EnsemblPlantsGene:GSMUA_Achr10G11120_001 | EnsemblPlants:GSMUA_Achr10P11120_001 | EnsemblPlants:GSMUA_Achr10T11120_001 | InterPro:IPR038716 | UniProt:M0RH88 | HAMAP:MF_01478 |
| InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF72 | InterPro:Ribosomal_L12 | SignalP:SignalP-noTM |
| UniParc:UPI0002958E44 | SEG:seg | : | : | : | : |
Description
60S acidic ribosomal protein P2B [Source:GMGC_GENE;Acc:GSMUA_Achr10G11120_001]
Coordinates
chr10:+:20696052..20698870
Molecular Weight (calculated)
11623.8 Da
IEP (calculated)
4.053
GRAVY (calculated)
0.136
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVIAAYLLA VLGGNISPTT GDVKGILESV GADVVDEKIE LLLSQVGGKD LTELIATGRE KFASVPCGGG IAVAVAAPAG GSGGAAAASS AAEPKKEEKV
101: EEKEESDEDM GFSLFD
101: EEKEESDEDM GFSLFD
1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE
Arabidopsis Description
RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.