Factsheet for GSMUA_Achr4P02910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P31180_001	Banana	plasma membrane	83.33	84.82
GSMUA_Achr7P25500_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.46	81.74
GSMUA_Achr10P...	Banana	plasma membrane	69.3	68.1
GSMUA_Achr6P07520_001	Banana	cytosol	55.26	67.02
TraesCS7B01G290200.1	Wheat	cytosol	47.37	48.21
TraesCS7D01G384000.1	Wheat	cytosol	47.37	48.21
Os08t0250300-00	Rice	cytosol	44.74	44.74
Os07t0251301-00	Rice	cytosol	36.84	38.18
Os07t0470300-00	Rice	cytosol	35.09	36.7
HORVU7Hr1G091910.1	Barley	plastid	42.98	24.26

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr4G02910_001	EnsemblPlants:GSMUA_Achr4P02910_001	EnsemblPlants:GSMUA_Achr4T02910_001	InterPro:IPR038716	UniProt:M0SKK8	HAMAP:MF_01478
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF76	InterPro:Ribosomal_L12	UniParc:UPI0002960D4F
SEG:seg	:	:	:	:	:

Description

60S acidic ribosomal protein P2A [Source:GMGC_GENE;Acc:GSMUA_Achr4G02910_001]

Coordinates

chr4:+:2378219..2379128

Molecular Weight (calculated)

11593.6 Da

IEP (calculated)

4.095

GRAVY (calculated)

0.035

Length

114 amino acids

Sequence
(BLAST)

001: MKVIAAYLLA VLGGNSHPSA GDITSILESV GAEVDVKRIN LFLSEVEGKD ITELIAAGRE KFASVPSGGA VAAVSVAGAG GAAAGSAPAE EPKKEEKVEE
101: KEESDDDMGF SLFD

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.