Factsheet for GSMUA_Achr6P07520_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plasma membrane	75.53	61.21
Zm00001d001899_P001	Maize	plasma membrane	69.15	57.52
GSMUA_Achr3P31180_001	Banana	plasma membrane	68.09	57.14
EES13065	Sorghum	extracellular	68.09	57.14
Os01t0191100-01	Rice	extracellular	69.15	57.02
Zm00001d026578_P002	Maize	plastid	67.02	56.76
Solyc11g067100.1.1	Tomato	nucleus	67.02	55.75
GSMUA_Achr4P02910_001	Banana	cytosol	67.02	55.26
GSMUA_Achr7P25500_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.02	54.78
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.89	54.46
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.02	54.31
PGSC0003DMT400030564	Potato	extracellular	62.77	53.15
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.83	52.63
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.02	52.5
OQU78483	Sorghum	endoplasmic reticulum, extracellular	67.02	52.5
TraesCS2D01G291600.1	Wheat	unclear	62.77	52.21
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.77	52.21
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.77	52.21
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.77	51.3
KRH30835	Soybean	endoplasmic reticulum	60.64	50.0
KRH32679	Soybean	endoplasmic reticulum	60.64	50.0
PGSC0003DMT400029096	Potato	cytosol	57.45	48.21
VIT_10s0042g01190.t01	Wine grape	extracellular	57.45	47.79
VIT_18s0076g00370.t01	Wine grape	cytosol	47.87	45.45
VIT_06s0061g01600.t01	Wine grape	cytosol	65.96	42.76
CDY00130	Canola	cytosol	51.06	42.48
Bra039054.1-P	Field mustard	cytosol	51.06	42.48
AT5G40040.1	Thale cress	cytosol	51.06	42.11
AT3G28500.1	Thale cress	cytosol	51.06	41.74
CDX85202	Canola	extracellular	50.0	41.59
Bra025339.1-P	Field mustard	cytosol	48.94	40.71
CDX86428	Canola	cytosol	48.94	40.71
Solyc06g074430.2.1	Tomato	nucleus, unclear	65.96	40.0
CDY04023	Canola	cytosol	46.81	38.94
Solyc07g007880.1.1	Tomato	cytosol	42.55	35.71
PGSC0003DMT400085198	Potato	cytosol, plastid	44.68	35.59
Bra033049.1-P	Field mustard	cytosol	42.55	35.09
CDY47246	Canola	extracellular	42.55	35.09
Zm00001d009652_P003	Maize	mitochondrion	60.64	22.53
Zm00001d009657_P001	Maize	cytosol, mitochondrion	67.02	22.42
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.6	21.93

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr6G07520_001	EnsemblPlants:GSMUA_Achr6P07520_001	EnsemblPlants:GSMUA_Achr6T07520_001	InterPro:IPR038716	UniProt:M0T501	HAMAP:MF_01478
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF72	InterPro:Ribosomal_L12	UniParc:UPI000296A417
SEG:seg	:	:	:	:	:

Description

60S acidic ribosomal protein P2A [Source:GMGC_GENE;Acc:GSMUA_Achr6G07520_001]

Coordinates

chr6:+:5089179..5090278

Molecular Weight (calculated)

9516.1 Da

IEP (calculated)

4.085

GRAVY (calculated)

-0.149

Length

94 amino acids

Sequence
(BLAST)

1: MKSILESVGA DVDEKKIELL LSQVHGNDLT ELIATGRDKI ASVPCGGGGA VAVAAIAGGG GGASAAPAVS EPKKEEKVEE KEESDDDMGF SLFD

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.