Factsheet for GSMUA_Achr3P31180_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 3
plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02910_001	Banana	cytosol	84.82	83.33
GSMUA_Achr7P25500_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.04	80.87
GSMUA_Achr10P...	Banana	plasma membrane	71.43	68.97
GSMUA_Achr6P07520_001	Banana	cytosol	57.14	68.09
TraesCS7B01G290200.1	Wheat	cytosol	51.79	51.79
TraesCS7D01G384000.1	Wheat	cytosol	51.79	51.79
Os08t0250300-00	Rice	cytosol	48.21	47.37
Os07t0470300-00	Rice	cytosol	40.18	41.28
Os07t0251301-00	Rice	cytosol	40.18	40.91
HORVU7Hr1G091910.1	Barley	plastid	47.32	26.24

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr3G31180_001	EnsemblPlants:GSMUA_Achr3P31180_001	EnsemblPlants:GSMUA_Achr3T31180_001	InterPro:IPR038716	UniProt:M0SJD2	HAMAP:MF_01478
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF75	InterPro:Ribosomal_L12	UniParc:UPI00029515F5
SEG:seg	:	:	:	:	:

Description

60S acidic ribosomal protein P2B [Source:GMGC_GENE;Acc:GSMUA_Achr3G31180_001]

Coordinates

chr3:-:29602010..29602786

Molecular Weight (calculated)

11535.6 Da

IEP (calculated)

4.206

GRAVY (calculated)

-0.069

Length

112 amino acids

Sequence
(BLAST)

001: MKVIAAYLLA VLGGNTRPSA GDLKSILESV GAEVDEKRVD LFLSEVKGKD LAELIAAGRE KFASVPSGGA VAAVAVSAPG AGAAPAAEEP KKEEKVEEKE
101: ESDDDMGFSL FD

Best Arabidopsis Sequence Match ( AT2G27710.4 )
(BLAST)

1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE

Arabidopsis Description

RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.