CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13065	Sorghum	extracellular	83.93	83.93
OQU78483	Sorghum	endoplasmic reticulum, extracellular	83.93	78.33
TraesCS2D01G291600.1	Wheat	unclear	78.57	77.88
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.57	77.88
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.57	77.88
Os01t0191100-01	Rice	extracellular	77.68	76.32
GSMUA_Achr10P...	Banana	plasma membrane	71.43	68.97
KRH32679	Soybean	endoplasmic reticulum	67.86	66.67
Solyc11g067100.1.1	Tomato	nucleus	66.96	66.37
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.86	65.52
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.07	64.91
KRH30835	Soybean	endoplasmic reticulum	66.07	64.91
GSMUA_Achr6P07520_001	Banana	cytosol	54.46	64.89
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.18	63.48
PGSC0003DMT400030564	Potato	extracellular	62.5	63.06
PGSC0003DMT400029096	Potato	cytosol	59.82	59.82
VIT_10s0042g01190.t01	Wine grape	extracellular	58.93	58.41
AT5G40040.1	Thale cress	cytosol	54.46	53.51
VIT_18s0076g00370.t01	Wine grape	cytosol	46.43	52.53
KXG22113	Sorghum	endoplasmic reticulum, extracellular, plastid	66.96	51.72
VIT_06s0061g01600.t01	Wine grape	cytosol	66.07	51.03
AT3G28500.1	Thale cress	cytosol	50.89	49.57
CDY04023	Canola	cytosol	50.0	49.56
CDY00130	Canola	cytosol	50.0	49.56
CDX86428	Canola	cytosol	50.0	49.56
Bra039054.1-P	Field mustard	cytosol	50.0	49.56
Bra025339.1-P	Field mustard	cytosol	50.0	49.56
CDX85202	Canola	extracellular	49.11	48.67
Solyc06g074430.2.1	Tomato	nucleus, unclear	66.96	48.39
PGSC0003DMT400085198	Potato	cytosol, plastid	50.89	48.31
CDY47246	Canola	extracellular	49.11	48.25
Bra033049.1-P	Field mustard	cytosol	49.11	48.25
Solyc07g007880.1.1	Tomato	cytosol	46.43	46.43
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.07	40.35

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	EntrezGene:8075266	UniProt:C5YFT4	EnsemblPlants:EES12108	ProteinID:EES12108
ProteinID:EES12108.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0006414	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	InterPro:IPR038716	HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428
PANTHER:PTHR21141	PANTHER:PTHR21141:SF76	InterPro:Ribosomal_L12	EnsemblPlantsGene:SORBI_3006G067800	unigene:Sbi.4042	UniParc:UPI0001A8702A
RefSeq:XP_002447780.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:42823157..42825066

Molecular Weight (calculated)

11486.4 Da

IEP (calculated)

4.048

GRAVY (calculated)

-0.089

Length

112 amino acids

Sequence
(BLAST)

001: MKFVAAYLLA VLAGNNDPSV EDLKTILESV GAETDSEKME HLLSQVSGKD ITELIAAGRE KFASVPCGGG GVAVAAAAPA AAGGAAPAAE KKEEKVEEKE
101: ESDDDMGFSL FD

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.