Factsheet for PGSC0003DMT400029096

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.32	69.83
PGSC0003DMT400030564	Potato	extracellular	66.07	66.67
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.07	64.35
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.18	64.04
EES13065	Sorghum	extracellular	62.5	62.5
KRH32679	Soybean	endoplasmic reticulum	63.39	62.28
GSMUA_Achr10P...	Banana	plasma membrane	63.39	61.21
KRH30835	Soybean	endoplasmic reticulum	61.61	60.53
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.82	59.82
Zm00001d001899_P001	Maize	plasma membrane	59.82	59.29
VIT_10s0042g01190.t01	Wine grape	extracellular	59.82	59.29
TraesCS2D01G291600.1	Wheat	unclear	59.82	59.29
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.82	59.29
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.82	59.29
Zm00001d026578_P002	Maize	plastid	58.04	58.56
Os01t0191100-01	Rice	extracellular	58.93	57.89
GSMUA_Achr6P07520_001	Banana	cytosol	48.21	57.45
OQU78483	Sorghum	endoplasmic reticulum, extracellular	60.71	56.67
AT3G28500.1	Thale cress	cytosol	58.04	56.52
PGSC0003DMT400085198	Potato	cytosol, plastid	58.93	55.93
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.82	55.83
VIT_06s0061g01600.t01	Wine grape	cytosol	70.54	54.48
VIT_18s0076g00370.t01	Wine grape	cytosol	45.54	51.52
CDX86428	Canola	cytosol	51.79	51.33
Bra025339.1-P	Field mustard	cytosol	51.79	51.33
CDY04023	Canola	cytosol	50.89	50.44
CDY00130	Canola	cytosol	50.89	50.44
AT5G40040.1	Thale cress	cytosol	50.89	50.0
CDY47246	Canola	extracellular	50.89	50.0
CDX85202	Canola	extracellular	50.0	49.56
Bra033049.1-P	Field mustard	cytosol	50.0	49.12
Bra039054.1-P	Field mustard	cytosol	49.11	48.67
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.61	35.96
Zm00001d009652_P003	Maize	mitochondrion	58.04	25.69
Zm00001d009657_P001	Maize	cytosol, mitochondrion	59.82	23.84

Protein Annotations

Gene3D:1.10.10.1410	EntrezGene:102580255	MapMan:17.1.2.1.47	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR038716	UniProt:M1AS83	HAMAP:MF_01478	InterPro:P1/P2_N_sf
PFAM:PF00428	EnsemblPlantsGene:PGSC0003DMG400011194	PGSC:PGSC0003DMG400011194	EnsemblPlants:PGSC0003DMT400029096	PANTHER:PTHR21141	PANTHER:PTHR21141:SF75
InterPro:Ribosomal_L12	UniParc:UPI000294AC23	RefSeq:XP_006343627.1	SEG:seg	:	:

Description

60s acidic ribosomal protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011194]

Coordinates

chr7:-:1071668..1072006

Molecular Weight (calculated)

11486.6 Da

IEP (calculated)

4.135

GRAVY (calculated)

-0.014

Length

112 amino acids

Sequence
(BLAST)

001: MKVIATYLLA VLGGNTNPTA EDLKAILSSV GAEADDTKIE LLLSQVKGRD LAELIAAGRE KLASVPSGGG LVVASGGGAA AGAAVAEKKE EEKKVEEKEE
101: SDEEDFVLDI FG

Best Arabidopsis Sequence Match ( AT2G27710.4 )
(BLAST)

1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE

Arabidopsis Description

RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.