Factsheet for VIT_18s0076g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.72	61.74
VIT_10s0042g01190.t01	Wine grape	extracellular	65.66	57.52
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.65	56.14
PGSC0003DMT400030564	Potato	extracellular	61.62	54.95
Solyc11g067100.1.1	Tomato	nucleus	62.63	54.87
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.62	52.59
KRH32679	Soybean	endoplasmic reticulum	58.59	50.88
KRH30835	Soybean	endoplasmic reticulum	56.57	49.12
GSMUA_Achr6P07520_001	Banana	cytosol	45.45	47.87
TraesCS2D01G291600.1	Wheat	unclear	53.54	46.9
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.54	46.9
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.54	46.9
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.53	46.43
EES13065	Sorghum	extracellular	52.53	46.43
Os01t0191100-01	Rice	extracellular	52.53	45.61
PGSC0003DMT400029096	Potato	cytosol	51.52	45.54
Zm00001d001899_P001	Maize	plasma membrane	51.52	45.13
Zm00001d026578_P002	Maize	plastid	50.51	45.05
GSMUA_Achr10P...	Banana	plasma membrane	52.53	44.83
VIT_06s0061g01600.t01	Wine grape	cytosol	65.66	44.83
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.53	43.33
OQU78483	Sorghum	endoplasmic reticulum, extracellular	52.53	43.33
AT3G28500.1	Thale cress	cytosol	44.44	38.26
CDX85202	Canola	extracellular	43.43	38.05
CDY00130	Canola	cytosol	43.43	38.05
AT5G40040.1	Thale cress	cytosol	43.43	37.72
Solyc06g074430.2.1	Tomato	nucleus, unclear	58.59	37.42
CDY04023	Canola	cytosol	41.41	36.28
CDX86428	Canola	cytosol	41.41	36.28
Bra039054.1-P	Field mustard	cytosol	41.41	36.28
Bra025339.1-P	Field mustard	cytosol	41.41	36.28
CDY47246	Canola	extracellular	40.4	35.09
Bra033049.1-P	Field mustard	cytosol	39.39	34.21
Solyc07g007880.1.1	Tomato	cytosol	38.38	33.93
PGSC0003DMT400085198	Potato	cytosol, plastid	38.38	32.2
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.32	28.07
Zm00001d009652_P003	Maize	mitochondrion	51.52	20.16
Zm00001d009657_P001	Maize	cytosol, mitochondrion	52.53	18.51

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	ProteinID:CCB45141	ProteinID:CCB45141.1	UniProt:F6GYV5	EMBL:FN594974
GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR038716
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF75	UniParc:UPI000210A327	ArrayExpress:VIT_18s0076g00370
EnsemblPlantsGene:VIT_18s0076g00370	EnsemblPlants:VIT_18s0076g00370.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:16296859..16297521

Molecular Weight (calculated)

9959.7 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.260

Length

99 amino acids

Sequence
(BLAST)

1: MHANFSLNPI SNVSPCADDL KSILGSVGAE TDDDGIELLL SEVKGKDITK LIASRREKLA SVPSGGGVVV AASDGGSGAA PAATEPKNEE KGGRERGIG

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.