Factsheet for Os01t0191100-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 26035336
extracellular: 26072143
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026578_P002	Maize	plastid	84.21	86.49
EES13065	Sorghum	extracellular	81.58	83.04
Zm00001d001899_P001	Maize	plasma membrane	81.58	82.3
TraesCS2D01G291600.1	Wheat	unclear	79.82	80.53
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	79.82	80.53
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	79.82	80.53
OQU78483	Sorghum	endoplasmic reticulum, extracellular	83.33	79.17
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.32	77.68
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.7	76.67
GSMUA_Achr6P07520_001	Banana	cytosol	57.02	69.15
GSMUA_Achr10P...	Banana	plasma membrane	67.54	66.38
Solyc11g067100.1.1	Tomato	nucleus	65.79	66.37
PGSC0003DMT400030564	Potato	extracellular	63.16	64.86
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.04	64.04
KRH32679	Soybean	endoplasmic reticulum	63.16	63.16
KRH30835	Soybean	endoplasmic reticulum	63.16	63.16
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.16	62.61
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.16	62.07
PGSC0003DMT400029096	Potato	cytosol	57.89	58.93
Os05t0445500-01	Rice	nucleus	70.18	57.55
VIT_10s0042g01190.t01	Wine grape	extracellular	57.02	57.52
VIT_18s0076g00370.t01	Wine grape	cytosol	45.61	52.53
AT3G28500.1	Thale cress	cytosol	50.88	50.43
VIT_06s0061g01600.t01	Wine grape	cytosol	64.04	50.34
CDY47246	Canola	extracellular	50.0	50.0
CDY04023	Canola	cytosol	49.12	49.56
Bra033049.1-P	Field mustard	cytosol	49.12	49.12
CDY00130	Canola	cytosol	48.25	48.67
CDX86428	Canola	cytosol	48.25	48.67
Bra039054.1-P	Field mustard	cytosol	48.25	48.67
Bra025339.1-P	Field mustard	cytosol	48.25	48.67
AT5G40040.1	Thale cress	cytosol	47.37	47.37
Solyc06g074430.2.1	Tomato	nucleus, unclear	64.04	47.1
CDX85202	Canola	extracellular	46.49	46.9
Solyc07g007880.1.1	Tomato	cytosol	45.61	46.43
PGSC0003DMT400085198	Potato	cytosol, plastid	47.37	45.76
Os08t0250300-00	Rice	cytosol	45.61	45.61
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.86	43.86
Os07t0251301-00	Rice	cytosol	40.35	41.82
Os07t0470300-00	Rice	cytosol	36.84	38.53
Zm00001d009652_P003	Maize	mitochondrion	75.44	33.99
Zm00001d009657_P001	Maize	cytosol, mitochondrion	79.82	32.38

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	EntrezGene:4326782	EMBL:AK058815	ProteinID:BAD72223.1	ProteinID:BAF04182.1
ProteinID:BAS70819.1	ProteinID:EAZ44369.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	InterPro:IPR038716	HAMAP:MF_01478	EnsemblPlantsGene:Os01g0191100	EnsemblPlants:Os01t0191100-01
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF76	UniProt:Q5SNH7	InterPro:Ribosomal_L12
UniParc:UPI000046D44D	RefSeq:XP_015622106.1	SEG:seg	:	:	:

Description

Similar to Acidic ribosomal protein P2a-4 (Fragment). (Os01t0191100-01)

Coordinates

chr1:+:4852435..4854387

Molecular Weight (calculated)

11607.6 Da

IEP (calculated)

3.959

GRAVY (calculated)

-0.011

Length

114 amino acids

Sequence
(BLAST)

001: MKFISAYLMA YLAGNSSPTA EDLTTILESV GCEIDNAKME LLLSQVSGKD ITELIACGRE KFASVPSGGG GVAVAAAAPA AGGAGGAPAA EAKKEDKVEE
101: KEESDDDMGF SLFD

Best Arabidopsis Sequence Match ( AT2G27710.4 )
(BLAST)

1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE

Arabidopsis Description

RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.