Factsheet for Solyc06g074430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g067100.1.1	Tomato	nucleus	64.52	88.5
PGSC0003DMT400030564	Potato	extracellular	61.94	86.49
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.06	78.95
KRH32679	Soybean	endoplasmic reticulum	56.13	76.32
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.84	73.91
KRH30835	Soybean	endoplasmic reticulum	54.19	73.68
EES13065	Sorghum	extracellular	50.97	70.54
VIT_10s0042g01190.t01	Wine grape	extracellular	50.32	69.03
Zm00001d001899_P001	Maize	plasma membrane	49.68	68.14
GSMUA_Achr10P...	Banana	plasma membrane	50.97	68.1
VIT_06s0061g01600.t01	Wine grape	cytosol	63.23	67.59
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.39	66.96
OQU78483	Sorghum	endoplasmic reticulum, extracellular	51.61	66.67
Zm00001d026578_P002	Maize	plastid	47.74	66.67
GSMUA_Achr6P07520_001	Banana	cytosol	40.0	65.96
TraesCS2D01G291600.1	Wheat	unclear	47.1	64.6
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.1	64.6
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.1	64.6
Os01t0191100-01	Rice	extracellular	47.1	64.04
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.03	63.33
AT3G28500.1	Thale cress	cytosol	45.16	60.87
Solyc07g007880.1.1	Tomato	cytosol	43.87	60.71
VIT_18s0076g00370.t01	Wine grape	cytosol	37.42	58.59
AT5G40040.1	Thale cress	cytosol	42.58	57.89
CDY00130	Canola	cytosol	41.29	56.64
Bra039054.1-P	Field mustard	cytosol	41.29	56.64
Bra025339.1-P	Field mustard	cytosol	40.65	55.75
CDX86428	Canola	cytosol	40.65	55.75
CDX85202	Canola	extracellular	40.0	54.87
CDY04023	Canola	cytosol	40.0	54.87
Bra033049.1-P	Field mustard	cytosol	39.35	53.51
CDY47246	Canola	extracellular	38.71	52.63
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.1	36.84
Zm00001d009652_P003	Maize	mitochondrion	50.97	31.23
Zm00001d009657_P001	Maize	cytosol, mitochondrion	51.61	28.47

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR038716	UniProt:K4C9G1	HAMAP:MF_01478
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF72	InterPro:Ribosomal_L12	EnsemblPlantsGene:Solyc06g074430.2
EnsemblPlants:Solyc06g074430.2.1	UniParc:UPI00027665A5	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:46067812..46070508

Molecular Weight (calculated)

16202.4 Da

IEP (calculated)

4.446

GRAVY (calculated)

-0.124

Length

155 amino acids

Sequence
(BLAST)

001: MCAKVFDLLY NLIIPSFFIN PRSSTKGPPF GGSLCLKSPQ EEKMKVIAAY LLAVLGGNTS PSEKDLKKIL ASVGAEADDD RIQLLLSQVE GKDITELIAA
101: GREKLASVPA GGGAACAVAA PGGGGAAPAA EEKKEEKKVE EKEESDDDMG FSLFD

Best Arabidopsis Sequence Match ( AT2G27710.4 )
(BLAST)

1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE

Arabidopsis Description

RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.