Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 3
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019150 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 81.08 | 77.59 |
| VIT_08s0007g03620.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 78.38 | 76.32 |
| KRH30835 | Soybean | endoplasmic reticulum | 75.68 | 73.68 |
| KRH32679 | Soybean | endoplasmic reticulum | 74.77 | 72.81 |
| VIT_13s0074g00750.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 73.87 | 71.3 |
| VIT_10s0042g01190.t01 | Wine grape | extracellular | 69.37 | 68.14 |
| PGSC0003DMT400029096 | Potato | cytosol | 66.67 | 66.07 |
| EES13065 | Sorghum | extracellular | 66.67 | 66.07 |
| Zm00001d026578_P002 | Maize | plastid | 64.86 | 64.86 |
| TraesCS2D01G291600.1 | Wheat | unclear | 65.77 | 64.6 |
| TraesCS2B01G310300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.77 | 64.6 |
| TraesCS2A01G294000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.77 | 64.6 |
| VIT_06s0061g01600.t01 | Wine grape | cytosol | 83.78 | 64.14 |
| GSMUA_Achr10P... | Banana | plasma membrane | 66.67 | 63.79 |
| Os01t0191100-01 | Rice | extracellular | 64.86 | 63.16 |
| Zm00001d001899_P001 | Maize | plasma membrane | 63.96 | 62.83 |
| GSMUA_Achr6P07520_001 | Banana | cytosol | 53.15 | 62.77 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 63.06 | 62.5 |
| Solyc06g074430.2.1 | Tomato | nucleus, unclear | 86.49 | 61.94 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 66.67 | 61.67 |
| VIT_18s0076g00370.t01 | Wine grape | cytosol | 54.95 | 61.62 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 64.86 | 60.0 |
| AT5G40040.1 | Thale cress | cytosol | 60.36 | 58.77 |
| CDY00130 | Canola | cytosol | 56.76 | 55.75 |
| CDX86428 | Canola | cytosol | 56.76 | 55.75 |
| CDX85202 | Canola | extracellular | 56.76 | 55.75 |
| Bra039054.1-P | Field mustard | cytosol | 56.76 | 55.75 |
| Bra025339.1-P | Field mustard | cytosol | 56.76 | 55.75 |
| AT3G28500.1 | Thale cress | cytosol | 57.66 | 55.65 |
| CDY04023 | Canola | cytosol | 55.86 | 54.87 |
| PGSC0003DMT400085198 | Potato | cytosol, plastid | 57.66 | 54.24 |
| CDY47246 | Canola | extracellular | 50.45 | 49.12 |
| Bra033049.1-P | Field mustard | cytosol | 49.55 | 48.25 |
| HORVU0Hr1G004480.1 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 37.84 | 36.84 |
| Zm00001d009652_P003 | Maize | mitochondrion | 64.86 | 28.46 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 67.57 | 26.69 |
Protein Annotations
| Gene3D:1.10.10.1410 | EntrezGene:102588127 | MapMan:17.1.2.1.47 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR038716 | UniProt:M1AUE9 | HAMAP:MF_01478 | InterPro:P1/P2_N_sf |
| PFAM:PF00428 | EnsemblPlantsGene:PGSC0003DMG400011702 | PGSC:PGSC0003DMG400011702 | EnsemblPlants:PGSC0003DMT400030564 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF72 |
| InterPro:Ribosomal_L12 | SignalP:SignalP-noTM | UniParc:UPI000296326C | RefSeq:XP_006365780.1 | RefSeq:XP_006365781.1 | SEG:seg |
Description
60S acidic ribosomal protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011702]
Coordinates
chr1:-:7277684..7279565
Molecular Weight (calculated)
11286.3 Da
IEP (calculated)
4.159
GRAVY (calculated)
-0.098
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVIAAYLLA VLGGNASPSA KDLKNILGCV GAEADDDRIQ LLLSQVDGKD ITELIAAGRE KLASVPSGGG AVAVAAPAGG AAAAPAEEKK EEKKEEKEAS
101: EDEDMGFSLF D
101: EDEDMGFSLF D
001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E
101: SDDDMGFSLF E
Arabidopsis Description
RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.