Factsheet for VIT_13s0074g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
cytosol 3
plastid 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g01190.t01	Wine grape	extracellular	82.61	84.07
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.0	80.7
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.26	77.59
Solyc11g067100.1.1	Tomato	nucleus	75.65	76.99
KRH32679	Soybean	endoplasmic reticulum	74.78	75.44
PGSC0003DMT400030564	Potato	extracellular	71.3	73.87
KRH30835	Soybean	endoplasmic reticulum	72.17	72.81
VIT_18s0076g00370.t01	Wine grape	cytosol	61.74	71.72
PGSC0003DMT400029096	Potato	cytosol	64.35	66.07
GSMUA_Achr10P...	Banana	plasma membrane	66.09	65.52
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.48	65.18
EES13065	Sorghum	extracellular	63.48	65.18
VIT_06s0061g01600.t01	Wine grape	cytosol	80.87	64.14
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.61	63.72
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.61	63.72
TraesCS2D01G291600.1	Wheat	unclear	62.61	63.72
Os01t0191100-01	Rice	extracellular	62.61	63.16
Zm00001d026578_P002	Maize	plastid	60.87	63.06
Zm00001d001899_P001	Maize	plasma membrane	61.74	62.83
GSMUA_Achr6P07520_001	Banana	cytosol	51.3	62.77
OQU78483	Sorghum	endoplasmic reticulum, extracellular	62.61	60.0
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.74	59.17
AT3G28500.1	Thale cress	cytosol	58.26	58.26
CDY47246	Canola	extracellular	57.39	57.89
CDY00130	Canola	cytosol	56.52	57.52
Bra033049.1-P	Field mustard	cytosol	56.52	57.02
CDX85202	Canola	extracellular	54.78	55.75
Bra039054.1-P	Field mustard	cytosol	54.78	55.75
CDX86428	Canola	cytosol	53.91	54.87
CDY04023	Canola	cytosol	53.91	54.87
Bra025339.1-P	Field mustard	cytosol	53.91	54.87
Solyc06g074430.2.1	Tomato	nucleus, unclear	73.91	54.84
Solyc07g007880.1.1	Tomato	cytosol	53.04	54.46
AT5G40040.1	Thale cress	cytosol	53.91	54.39
PGSC0003DMT400085198	Potato	cytosol, plastid	55.65	54.24
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.39	37.72
Zm00001d009652_P003	Maize	mitochondrion	59.13	26.88
Zm00001d009657_P001	Maize	cytosol, mitochondrion	61.74	25.27

Protein Annotations

Gene3D:1.10.10.1410	EntrezGene:100241998	wikigene:100241998	MapMan:17.1.2.1.47	ProteinID:CBI40248	ProteinID:CBI40248.3
UniProt:D7UBY3	EMBL:FN596753	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR038716	EntrezGene:LOC100241998	wikigene:LOC100241998
HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF72	InterPro:Ribosomal_L12
TIGR:TC55137	TIGR:TC56943	UniParc:UPI00019847DE	ArrayExpress:VIT_13s0074g00750	EnsemblPlantsGene:VIT_13s0074g00750	EnsemblPlants:VIT_13s0074g00750.t01
unigene:Vvi.11824	unigene:Vvi.19571	unigene:Vvi.25474	RefSeq:XP_002264645	RefSeq:XP_002264645.1	SEG:seg

Description

No Description!

Coordinates

chr13:-:9092359..9099537

Molecular Weight (calculated)

11280.2 Da

IEP (calculated)

3.885

GRAVY (calculated)

0.011

Length

115 amino acids

Sequence
(BLAST)

001: MKVIAAYLLA ALGGNGSPCA DDLKSILGSV GAEADDDGIE LLLSEVKGKD ITELIASGRE KLASVPSGGG VAVAAVAASG GGGGGGAAPA ATEPKEEKVE
101: EKEESDEDMG FSLFD

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.