Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG19681 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44590.1 | KXG19681 | AT1G10510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G073640.1 | Barley | cytosol | 64.14 | 82.3 |
| TraesCS1A01G277500.1 | Wheat | nucleus | 63.45 | 81.42 |
| TraesCS1D01G276700.1 | Wheat | extracellular | 62.07 | 80.36 |
| TraesCS1B01G286500.1 | Wheat | extracellular | 61.38 | 79.46 |
| EES13065 | Sorghum | extracellular | 55.86 | 72.32 |
| Os05t0445500-01 | Rice | nucleus | 64.83 | 67.63 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 55.86 | 67.5 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.72 | 66.96 |
| Zm00001d010128_P003 | Maize | cytosol | 70.34 | 61.82 |
| KRH26594 | Soybean | endoplasmic reticulum | 46.9 | 61.26 |
| CDY31188 | Canola | extracellular | 45.52 | 57.89 |
| CDX83277 | Canola | extracellular | 44.83 | 57.02 |
| Bra000501.1-P | Field mustard | extracellular | 44.83 | 57.02 |
| CDY04508 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 44.14 | 56.64 |
| AT3G44590.1 | Thale cress | extracellular | 42.76 | 55.86 |
| CDY30535 | Canola | extracellular | 43.45 | 55.75 |
| CDX77131 | Canola | extracellular | 43.45 | 55.75 |
| Bra034363.1-P | Field mustard | extracellular | 43.45 | 55.75 |
| Bra012004.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 43.45 | 55.75 |
| AT2G27710.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 44.14 | 55.65 |
| CDX71430 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 42.07 | 53.51 |
| AT2G27720.2 | Thale cress | extracellular | 43.45 | 48.46 |
| KRH22710 | Soybean | endoplasmic reticulum | 49.66 | 48.32 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | UniProt:A0A1B6P8W9 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0030529 | InterPro:IPR038716 | EnsemblPlants:KXG22113 | ProteinID:KXG22113 | ProteinID:KXG22113.1 | HAMAP:MF_01478 |
| InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF76 | InterPro:Ribosomal_L12 | EnsemblPlantsGene:SORBI_3009G155600 |
| UniParc:UPI00081AE2D9 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:51296823..51301256
Molecular Weight (calculated)
15397.3 Da
IEP (calculated)
4.302
GRAVY (calculated)
-0.001
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGTLLTAVL LSAAAGIRFF SYPRFRFSSR VFRMKVIAAY LLAVLGGNTS PTADDVKNIL ESVGAEADEE KLEFLLTELK DKDITEVIAA GRERLSSVTS
101: GGGAIAMGAP AAAAGGAAPA EEPKKEEKVE EKEESDEDMG FSLFD
101: GGGAIAMGAP AAAAGGAAPA EEPKKEEKVE EKEESDEDMG FSLFD
001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD
101: KDESSDDAGM MGLFD
Arabidopsis Description
RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.