Factsheet for Zm00001d028220_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010128_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55880.1	Zm00001d010128_P003	AT3G44590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95270	Sorghum	plastid	85.31	92.07
Os03t0215800-01	Rice	plastid	77.35	84.22
TraesCS4D01G244300.1	Wheat	plastid	74.29	82.54
TraesCS4B01G245100.1	Wheat	plastid	74.29	82.54
TraesCS4A01G079100.1	Wheat	plastid	73.67	82.23
HORVU4Hr1G067610.1	Barley	plastid	73.88	76.86
GSMUA_Achr3P26040_001	Banana	endoplasmic reticulum	67.55	76.62
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	62.65	72.92
PGSC0003DMT400057393	Potato	plastid	62.45	72.86
VIT_19s0015g00380.t01	Wine grape	plastid	62.45	72.68
AT1G55880.1	Thale cress	endoplasmic reticulum	61.63	71.73
KRH14231	Soybean	mitochondrion	61.43	70.82
Bra038025.1-P	Field mustard	plastid	61.63	69.91
CDY52906	Canola	plastid	61.63	69.91
CDY53756	Canola	endoplasmic reticulum	61.84	69.18
KRH73904	Soybean	cytosol	51.84	60.19
Zm00001d031136_P003	Maize	plasma membrane	23.06	34.77
Zm00001d003717_P001	Maize	cytosol	24.08	33.52
Zm00001d045327_P001	Maize	cytosol, extracellular	21.43	30.35
Zm00001d004413_P002	Maize	mitochondrion	21.84	28.01
Zm00001d008379_P001	Maize	plastid	22.65	27.89
Zm00001d040235_P005	Maize	plastid	22.24	27.53
Zm00001d045340_P004	Maize	cytosol	19.8	27.4
Zm00001d045344_P001	Maize	mitochondrion	10.2	23.47
Zm00001d045347_P001	Maize	mitochondrion	10.2	23.47
Zm00001d045341_P003	Maize	mitochondrion	10.0	23.0
Zm00001d045350_P001	Maize	mitochondrion	9.8	22.86
Zm00001d043101_P001	Maize	plastid	6.94	17.53

Protein Annotations

Gene3D:3.40.50.1100	MapMan:35.1	UniProt:A0A1D6JTA1	GO:GO:0005575	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	ProteinID:ONL95101.1
InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF35
SUPFAM:SSF53686	TMHMM:TMhelix	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0008451D7A	EnsemblPlantsGene:Zm00001d028220	EnsemblPlants:Zm00001d028220_P001
EnsemblPlants:Zm00001d028220_T001	SEG:seg	:	:	:	:

Description

Pyridoxal-5'-phosphate-dependent enzyme family protein

Coordinates

chr1:+:27042552..27048152

Molecular Weight (calculated)

52589.5 Da

IEP (calculated)

8.889

GRAVY (calculated)

-0.051

Length

490 amino acids

Sequence
(BLAST)

001: MAAATAAGAA ATAAAVSLIA CYILLHKSRA KLSWFPTVGF SRASGRRVRR RGLVEAIGNT PLIRINSLSD ATGCEILGKA EFLNPGGSVK DRVAVKIIEE
101: GIKNCKIMVV VRSCRTGLLV LPYLSIGSGS LLVVIVAGLP KLPLALALLD EGSAGSTAIS LATVAPAYGC RCHVVIPDDA AIEKSQIIEA LGATVERVRP
201: VSITHRDHFV NIARRRALEA NKLAAAQRES SEKQTNGLTH VDSEMLDDKL AVMQRESNKM QNGGPAHVNT EFSHCGKCDV NSDSKGGFFA DQFENLANYR
301: AHYECTGPEI WKQTKGNLHA FVAAAGTGGT IAGVSRYLKE KNRSIKCFLM DPPGSGLFNK VTRGVMYTKE EAEGKRLKNP FDTITEGIGI NRVTKNFMMA
401: ELDGAYRGSD REAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQDLGPGH TIVTILCDSG MRHLSKFFNE QYLADHGLTP TATGLEFLDK

Best Arabidopsis Sequence Match ( AT1G55880.1 )
(BLAST)

001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K

Arabidopsis Description

At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.